Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGR entry

There are 3 chains in PDB entry 8VGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 20	LEU 527
B	VAL 20	LEU 527
C	SER 3	LEU 527

There are 27 helices in PDB entry 8VGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	77	Right-handed 310
Helix 2	AA2	A	78	85	Right-handed alpha
Helix 3	AA3	A	86	88	Right-handed 310
Helix 4	AA4	A	125	130	Right-handed alpha
Helix 5	AA5	A	219	223	Right-handed 310
Helix 6	AA6	A	239	244	Right-handed 310
Helix 7	AA7	A	296	300	Right-handed 310
Helix 8	AA8	A	389	395	Right-handed alpha
Helix 9	AA9	A	448	458	Right-handed alpha
Helix 10	AB1	B	41	45	Right-handed 310
Helix 11	AB2	B	74	77	Right-handed 310
Helix 12	AB3	B	78	85	Right-handed alpha
Helix 13	AB4	B	125	130	Right-handed alpha
Helix 14	AB5	B	219	223	Right-handed 310
Helix 15	AB6	B	265	270	Right-handed alpha
Helix 16	AB7	B	350	355	Right-handed 310
Helix 17	AB8	B	389	395	Right-handed alpha
Helix 18	AB9	B	447	458	Right-handed alpha
Helix 19	AC1	B	472	475	Right-handed 310
Helix 20	AC2	C	10	13	Right-handed 310
Helix 21	AC3	C	41	47	Right-handed 310
Helix 22	AC4	C	74	77	Right-handed 310
Helix 23	AC5	C	78	85	Right-handed alpha
Helix 24	AC6	C	86	88	Right-handed 310
Helix 25	AC7	C	125	130	Right-handed alpha
Helix 26	AC8	C	318	323	Right-handed 310
Helix 27	AC9	C	447	458	Right-handed alpha

There are 25 sheets in PDB entry 8VGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	58	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	145	150	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	166	171	anti-parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	134	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	197	198	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	235	238	anti-parallel
Strand 4	A	499	502	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	258	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	273	276	anti-parallel
Strand 3	A	288	293	anti-parallel
Strand 4	A	363	366	anti-parallel
Strand 5	A	342	347	anti-parallel
Strand 6	A	324	330	anti-parallel
Strand 7	A	381	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	488	493	anti-parallel
Strand 3	A	481	482	anti-parallel
Strand 4	A	464	466	anti-parallel
Strand 5	A	512	513	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	488	493	anti-parallel
Strand 3	A	523	524	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	506	508	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	88	92	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	58	first strand
Strand 2	B	184	192	anti-parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	146	149	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	166	177	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	134	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	416	424	anti-parallel
Strand 3	B	235	237	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	416	424	anti-parallel
Strand 3	B	487	490	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	464	470	anti-parallel
Strand 6	B	509	513	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	325	332	anti-parallel
Strand 3	B	377	385	anti-parallel
Strand 4	B	272	275	anti-parallel
Strand 5	B	287	292	anti-parallel
Strand 6	B	364	367	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	142	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	185	190	anti-parallel
Strand 6	C	49	50	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	142	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	185	190	anti-parallel
Strand 6	C	56	57	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	166	173	anti-parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	134	138	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	197	198	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	419	424	anti-parallel
Strand 3	C	236	238	anti-parallel
Strand 4	C	499	500	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	257	258	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	325	330	anti-parallel
Strand 3	C	376	385	anti-parallel
Strand 4	C	272	275	anti-parallel
Strand 5	C	288	292	anti-parallel
Strand 6	C	364	366	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	337	338	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	488	494	anti-parallel
Strand 3	C	480	482	anti-parallel
Strand 4	C	464	469	anti-parallel
Strand 5	C	507	513	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	488	494	anti-parallel
Strand 3	C	523	525	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGR