Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGT entry

There are 2 chains in PDB entry 8VGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 326	ASP 608
B	ASN 131	ASP 491

There are 16 helices in PDB entry 8VGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	328	334	Right-handed alpha
Helix 2	AA2	A	341	344	Right-handed 310
Helix 3	AA3	A	355	360	Right-handed alpha
Helix 4	AA4	A	374	378	Right-handed 310
Helix 5	AA5	A	394	402	Right-handed 310
Helix 6	AA6	A	408	413	Right-handed alpha
Helix 7	AA7	A	442	448	Right-handed alpha
Helix 8	AA8	A	478	483	Right-handed alpha
Helix 9	AA9	A	570	572	Right-handed 310
Helix 10	AB1	B	177	187	Right-handed alpha
Helix 11	AB2	B	220	223	Right-handed 310
Helix 12	AB3	B	295	299	Right-handed 310
Helix 13	AB4	B	304	306	Right-handed 310
Helix 14	AB5	B	316	320	Right-handed 310
Helix 15	AB6	B	406	411	Right-handed alpha
Helix 16	AB7	B	477	490	Right-handed alpha

There are 12 sheets in PDB entry 8VGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	435	437	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	382	392	anti-parallel
Strand 3	A	587	598	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	A	364	371	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	382	392	anti-parallel
Strand 3	A	603	605	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	463	first strand
Strand 2	A	577	581	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	536	538	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	A	515	518	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	574	575	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	167	170	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	236	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	225	228	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	261	first strand
Strand 2	B	398	405	anti-parallel
Strand 3	B	424	427	anti-parallel
Strand 4	B	472	476	anti-parallel
Strand 5	B	452	461	anti-parallel
Strand 6	B	444	449	anti-parallel
Strand 7	B	378	383	anti-parallel
Strand 8	B	398	405	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	275	first strand
Strand 2	B	278	287	anti-parallel
Strand 3	B	290	293	anti-parallel
Strand 4	B	347	351	anti-parallel
Strand 5	B	326	333	anti-parallel
Strand 6	B	308	312	anti-parallel
Strand 7	B	270	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGT