Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGV entry

There are 12 chains in PDB entry 8VGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 505
B	ALA 512	ASP 664
C	GLN 1	SER 126
D	ALA 3	LEU 110
E	GLU 32	VAL 505
F	ALA 512	ASP 664
G	GLN 1	SER 126
H	ALA 3	LEU 110
I	GLU 32	VAL 505
J	ALA 512	ASP 664
K	GLN 1	SER 126
L	ALA 3	LEU 110

There are 69 helices in PDB entry 8VGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	68	Right-handed alpha
Helix 2	AA2	A	99	117	Right-handed alpha
Helix 3	AA3	A	122	126	Right-handed 310
Helix 4	AA4	A	135	139	Right-handed 310
Helix 5	AA5	A	195	198	Right-handed 310
Helix 6	AA6	A	335	353	Right-handed alpha
Helix 7	AA7	A	368	373	Right-handed alpha
Helix 8	AA8	A	377	381	Right-handed 310
Helix 9	AA9	A	425	432	Right-handed 310
Helix 10	AB1	A	475	481	Right-handed alpha
Helix 11	AB2	B	514	519	Right-handed alpha
Helix 12	AB3	B	528	534	Right-handed alpha
Helix 13	AB4	B	536	542	Right-handed alpha
Helix 14	AB5	B	569	571	Right-handed 310
Helix 15	AB6	B	572	597	Right-handed alpha
Helix 16	AB7	B	611	615	Right-handed 310
Helix 17	AB8	B	618	626	Right-handed alpha
Helix 18	AB9	B	627	636	Right-handed alpha
Helix 19	AC1	B	638	664	Right-handed alpha
Helix 20	AC2	C	28	30	Right-handed 310
Helix 21	AC3	C	62	65	Right-handed 310
Helix 22	AC4	C	87	91	Right-handed 310
Helix 23	AC5	D	81	85	Right-handed 310
Helix 24	AC6	E	63	68	Right-handed alpha
Helix 25	AC7	E	99	117	Right-handed alpha
Helix 26	AC8	E	122	126	Right-handed 310
Helix 27	AC9	E	195	198	Right-handed 310
Helix 28	AD1	E	335	353	Right-handed alpha
Helix 29	AD2	E	368	373	Right-handed alpha
Helix 30	AD3	E	377	381	Right-handed 310
Helix 31	AD4	E	425	429	Right-handed 310
Helix 32	AD5	E	475	481	Right-handed alpha
Helix 33	AD6	F	514	520	Right-handed alpha
Helix 34	AD7	F	528	534	Right-handed alpha
Helix 35	AD8	F	536	542	Right-handed alpha
Helix 36	AD9	F	543	545	Right-handed 310
Helix 37	AE1	F	569	571	Right-handed 310
Helix 38	AE2	F	572	597	Right-handed alpha
Helix 39	AE3	F	611	615	Right-handed 310
Helix 40	AE4	F	618	626	Right-handed alpha
Helix 41	AE5	F	627	636	Right-handed alpha
Helix 42	AE6	F	638	664	Right-handed alpha
Helix 43	AE7	G	28	30	Right-handed 310
Helix 44	AE8	G	62	65	Right-handed 310
Helix 45	AE9	G	87	91	Right-handed 310
Helix 46	AF1	H	81	85	Right-handed 310
Helix 47	AF2	I	63	68	Right-handed alpha
Helix 48	AF3	I	99	117	Right-handed alpha
Helix 49	AF4	I	122	126	Right-handed 310
Helix 50	AF5	I	195	198	Right-handed 310
Helix 51	AF6	I	335	353	Right-handed alpha
Helix 52	AF7	I	368	373	Right-handed alpha
Helix 53	AF8	I	377	381	Right-handed 310
Helix 54	AF9	I	425	432	Right-handed 310
Helix 55	AG1	I	475	481	Right-handed alpha
Helix 56	AG2	J	514	519	Right-handed alpha
Helix 57	AG3	J	528	534	Right-handed alpha
Helix 58	AG4	J	536	542	Right-handed alpha
Helix 59	AG5	J	543	545	Right-handed 310
Helix 60	AG6	J	569	571	Right-handed 310
Helix 61	AG7	J	572	597	Right-handed alpha
Helix 62	AG8	J	611	615	Right-handed 310
Helix 63	AG9	J	618	626	Right-handed alpha
Helix 64	AH1	J	627	636	Right-handed alpha
Helix 65	AH2	J	638	664	Right-handed alpha
Helix 66	AH3	K	28	30	Right-handed 310
Helix 67	AH4	K	62	65	Right-handed 310
Helix 68	AH5	K	87	91	Right-handed 310
Helix 69	AH6	L	81	85	Right-handed 310

There are 43 sheets in PDB entry 8VGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	498	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	75	76	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	175	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	179	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	434	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	330	334	anti-parallel
Strand 4	A	413	421	anti-parallel
Strand 5	A	382	385	anti-parallel
Strand 6	A	374	375	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	315	319	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	498	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	75	76	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	179	181	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	136	first strand
Strand 2	E	139	160	anti-parallel
Strand 3	E	167	175	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	434	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	421	anti-parallel
Strand 6	E	382	385	anti-parallel
Strand 7	E	374	375	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	457	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	394	395	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	302	309	first strand
Strand 2	E	315	322	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	50	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	98	101	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	494	498	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	J	603	609	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	486	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	56	first strand
Strand 2	I	75	76	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	93	first strand
Strand 2	I	237	239	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	175	first strand
Strand 2	I	148	160	anti-parallel
Strand 3	I	129	135	anti-parallel
Strand 4	I	190	193	anti-parallel
Strand 5	I	179	181	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	202	203	first strand
Strand 2	I	434	435	parallel
Strand 3	I	423	424	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	457	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	357	361	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	330	334	anti-parallel
Strand 4	I	413	421	anti-parallel
Strand 5	I	382	385	anti-parallel
Strand 6	I	374	375	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	308	first strand
Strand 2	I	316	319	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	121	125	parallel
Strand 3	K	92	101	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGV