Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGW entry

There are 12 chains in PDB entry 8VGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ARG 471
B	ALA 472	ASP 624
C	GLN 1	SER 113
D	GLU 1	ASP 107
E	ALA 1	ARG 471
F	ALA 472	ASP 624
G	GLN 1	SER 113
H	GLU 1	ASP 107
I	ALA 1	ARG 471
J	ALA 472	ASP 624
K	GLN 1	SER 113
L	GLU 1	ASP 107

There are 55 helices in PDB entry 8VGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	68	87	Right-handed alpha
Helix 3	AA3	A	92	96	Right-handed 310
Helix 4	AA4	A	295	314	Right-handed alpha
Helix 5	AA5	A	328	333	Right-handed alpha
Helix 6	AA6	A	433	438	Right-handed alpha
Helix 7	AA7	B	478	483	Right-handed alpha
Helix 8	AA8	B	484	487	Right-handed 310
Helix 9	AA9	B	491	495	Right-handed 310
Helix 10	AB1	B	497	504	Right-handed alpha
Helix 11	AB2	B	529	557	Right-handed alpha
Helix 12	AB3	B	578	582	Right-handed 310
Helix 13	AB4	B	587	592	Right-handed alpha
Helix 14	AB5	B	593	595	Right-handed 310
Helix 15	AB6	B	598	616	Right-handed alpha
Helix 16	AB7	B	620	624	Right-handed 310
Helix 17	AB8	C	61	65	Right-handed 310
Helix 18	AB9	C	73	75	Right-handed 310
Helix 19	AC1	C	83	87	Right-handed 310
Helix 20	AC2	D	79	83	Right-handed 310
Helix 21	AC3	E	29	35	Right-handed alpha
Helix 22	AC4	E	68	86	Right-handed alpha
Helix 23	AC5	E	92	96	Right-handed 310
Helix 24	AC6	E	295	314	Right-handed alpha
Helix 25	AC7	E	433	438	Right-handed alpha
Helix 26	AC8	E	439	442	Right-handed 310
Helix 27	AC9	E	462	466	Right-handed 310
Helix 28	AD1	F	478	483	Right-handed alpha
Helix 29	AD2	F	484	487	Right-handed 310
Helix 30	AD3	F	489	494	Right-handed alpha
Helix 31	AD4	F	497	504	Right-handed alpha
Helix 32	AD5	F	529	557	Right-handed alpha
Helix 33	AD6	F	578	583	Right-handed alpha
Helix 34	AD7	F	587	592	Right-handed alpha
Helix 35	AD8	F	598	616	Right-handed alpha
Helix 36	AD9	G	61	65	Right-handed 310
Helix 37	AE1	G	73	75	Right-handed 310
Helix 38	AE2	G	83	87	Right-handed 310
Helix 39	AE3	I	29	35	Right-handed alpha
Helix 40	AE4	I	70	87	Right-handed alpha
Helix 41	AE5	I	92	96	Right-handed 310
Helix 42	AE6	I	295	314	Right-handed alpha
Helix 43	AE7	I	432	438	Right-handed alpha
Helix 44	AE8	I	462	466	Right-handed 310
Helix 45	AE9	J	478	483	Right-handed alpha
Helix 46	AF1	J	484	487	Right-handed 310
Helix 47	AF2	J	489	495	Right-handed alpha
Helix 48	AF3	J	497	504	Right-handed alpha
Helix 49	AF4	J	529	557	Right-handed alpha
Helix 50	AF5	J	578	583	Right-handed alpha
Helix 51	AF6	J	587	592	Right-handed alpha
Helix 52	AF7	J	598	616	Right-handed alpha
Helix 53	AF8	K	61	65	Right-handed 310
Helix 54	AF9	K	83	87	Right-handed 310
Helix 55	AG1	L	79	83	Right-handed 310

There are 46 sheets in PDB entry 8VGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	B	564	569	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	444	449	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	204	207	anti-parallel
Strand 5	A	53	55	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	177	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	171	172	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	198	201	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	136	first strand
Strand 2	A	109	122	anti-parallel
Strand 3	A	99	106	anti-parallel
Strand 4	A	152	154	anti-parallel
Strand 5	A	142	143	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	391	393	parallel
Strand 3	A	381	383	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	401	414	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	318	321	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	246	249	anti-parallel
Strand 3	A	401	414	anti-parallel
Strand 4	A	254	260	anti-parallel
Strand 5	A	291	294	anti-parallel
Strand 6	A	372	379	anti-parallel
Strand 7	A	341	345	anti-parallel
Strand 8	A	334	338	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	269	first strand
Strand 2	A	277	283	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	58	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	84	89	anti-parallel
Strand 4	D	34	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	457	first strand
Strand 2	E	5	8	anti-parallel
Strand 3	F	564	569	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	444	449	anti-parallel
Strand 3	E	185	190	anti-parallel
Strand 4	E	204	207	anti-parallel
Strand 5	E	53	55	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	26	first strand
Strand 2	E	177	180	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	171	172	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	198	201	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	136	first strand
Strand 2	E	109	122	anti-parallel
Strand 3	E	99	106	anti-parallel
Strand 4	E	152	154	anti-parallel
Strand 5	E	142	143	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	165	first strand
Strand 2	E	391	393	parallel
Strand 3	E	381	383	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	223	first strand
Strand 2	E	401	414	anti-parallel
Strand 3	E	423	428	anti-parallel
Strand 4	E	318	321	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	235	first strand
Strand 2	E	246	249	anti-parallel
Strand 3	E	401	414	anti-parallel
Strand 4	E	254	260	anti-parallel
Strand 5	E	291	294	anti-parallel
Strand 6	E	372	379	anti-parallel
Strand 7	E	341	345	anti-parallel
Strand 8	E	334	338	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	269	first strand
Strand 2	E	277	283	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	56	57	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	100	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	71	75	anti-parallel
Strand 4	H	62	66	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	84	89	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	8	first strand
Strand 2	J	564	569	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	17	first strand
Strand 2	I	444	449	anti-parallel
Strand 3	I	185	190	anti-parallel
Strand 4	I	204	207	anti-parallel
Strand 5	I	53	56	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	26	first strand
Strand 2	I	177	180	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	171	172	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	64	first strand
Strand 2	I	198	201	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	136	first strand
Strand 2	I	109	122	anti-parallel
Strand 3	I	99	106	anti-parallel
Strand 4	I	152	154	anti-parallel
Strand 5	I	142	143	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	165	first strand
Strand 2	I	391	393	parallel
Strand 3	I	381	383	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	221	223	first strand
Strand 2	I	401	414	anti-parallel
Strand 3	I	254	260	anti-parallel
Strand 4	I	291	294	anti-parallel
Strand 5	I	372	379	anti-parallel
Strand 6	I	341	345	anti-parallel
Strand 7	I	334	338	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	233	235	first strand
Strand 2	I	246	249	anti-parallel
Strand 3	I	401	414	anti-parallel
Strand 4	I	423	428	anti-parallel
Strand 5	I	318	321	parallel
Strand 6	I	354	355	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	264	272	first strand
Strand 2	I	275	283	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	46	52	anti-parallel
Strand 6	K	56	58	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	100	103	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGW