Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VGX entry

There are 2 chains in PDB entry 8VGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9ILE 598
B
 GLN 9ILE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 8VGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
73 87Right-handed alpha
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
112 118Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
154 170Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
180 182Right-handed 310
Helix 10
AB1
A
183 196Right-handed alpha
Helix 11
AB2
A
197 202Right-handed alpha
Helix 12
AB3
A
209 215Right-handed alpha
Helix 13
AB4
A
240 245Right-handed alpha
Helix 14
AB5
A
265 270Right-handed alpha
Helix 15
AB6
A
296 305Right-handed alpha
Helix 16
AB7
A
324 335Right-handed alpha
Helix 17
AB8
A
338 351Right-handed alpha
Helix 18
AB9
A
364 369Right-handed alpha
Helix 19
AC1
A
377 402Right-handed alpha
Helix 20
AC2
A
408 422Right-handed alpha
Helix 21
AC3
A
430 432Right-handed 310
Helix 22
AC4
A
433 440Right-handed alpha
Helix 23
AC5
A
440 459Right-handed alpha
Helix 24
AC6
A
485 502Right-handed alpha
Helix 25
AC7
A
532 550Right-handed alpha
Helix 26
AC8
A
554 578Right-handed alpha
Helix 27
AC9
B
10 29Right-handed alpha
Helix 28
AD1
B
38 43Right-handed alpha
Helix 29
AD2
B
73 87Right-handed alpha
Helix 30
AD3
B
88 94Right-handed alpha
Helix 31
AD4
B
112 118Right-handed alpha
Helix 32
AD5
B
129 133Right-handed 310
Helix 33
AD6
B
154 170Right-handed alpha
Helix 34
AD7
B
174 178Right-handed 310
Helix 35
AD8
B
180 196Right-handed alpha
Helix 36
AD9
B
197 202Right-handed alpha
Helix 37
AE1
B
209 216Right-handed alpha
Helix 38
AE2
B
240 245Right-handed alpha
Helix 39
AE3
B
265 270Right-handed alpha
Helix 40
AE4
B
296 305Right-handed alpha
Helix 41
AE5
B
324 335Right-handed alpha
Helix 42
AE6
B
338 351Right-handed alpha
Helix 43
AE7
B
364 369Right-handed alpha
Helix 44
AE8
B
377 402Right-handed alpha
Helix 45
AE9
B
408 422Right-handed alpha
Helix 46
AF1
B
423 426Right-handed 310
Helix 47
AF2
B
430 432Right-handed 310
Helix 48
AF3
B
433 440Right-handed alpha
Helix 49
AF4
B
440 459Right-handed alpha
Helix 50
AF5
B
485 502Right-handed alpha
Helix 51
AF6
B
532 551Right-handed alpha
Helix 52
AF7
B
554 577Right-handed alpha
Helix 53
AF8
B
578 580Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 8VGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
B
370 371parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
278 281anti-parallel
Strand 3
B
278 281anti-parallel
Strand 4
B
272 275anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
B
125 126parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
530 531anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
521 523anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 589first strand
Strand 2
A
595 598anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 508first strand
Strand 2
B
530 531anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 514first strand
Strand 2
B
521 523anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 589first strand
Strand 2
B
595 598anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il