Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VH3 entry

There are 6 chains in PDB entry 8VH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 504
Z	VAL 518	ASP 664
E	GLU 32	VAL 504
F	VAL 518	ASP 664
I	GLU 32	VAL 504
J	VAL 518	ASP 664

There are 49 helices in PDB entry 8VH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	74	Right-handed alpha
Helix 2	AA2	A	94	98	Right-handed 310
Helix 3	AA3	A	99	117	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	137	139	Right-handed 310
Helix 6	AA6	A	205	209	Right-handed 310
Helix 7	AA7	A	334	350	Right-handed alpha
Helix 8	AA8	A	377	381	Right-handed 310
Helix 9	AA9	A	472	480	Right-handed 310
Helix 10	AB1	Z	529	534	Right-handed alpha
Helix 11	AB2	Z	536	542	Right-handed alpha
Helix 12	AB3	Z	572	593	Right-handed alpha
Helix 13	AB4	Z	594	597	Right-handed 310
Helix 14	AB5	Z	627	636	Right-handed alpha
Helix 15	AB6	Z	638	661	Right-handed alpha
Helix 16	AB7	Z	662	664	Right-handed 310
Helix 17	AB8	E	68	74	Right-handed alpha
Helix 18	AB9	E	94	98	Right-handed 310
Helix 19	AC1	E	99	117	Right-handed alpha
Helix 20	AC2	E	122	126	Right-handed 310
Helix 21	AC3	E	137	139	Right-handed 310
Helix 22	AC4	E	205	209	Right-handed 310
Helix 23	AC5	E	334	350	Right-handed alpha
Helix 24	AC6	E	368	373	Right-handed alpha
Helix 25	AC7	E	377	381	Right-handed 310
Helix 26	AC8	E	473	480	Right-handed 310
Helix 27	AC9	F	529	534	Right-handed alpha
Helix 28	AD1	F	536	542	Right-handed alpha
Helix 29	AD2	F	571	595	Right-handed alpha
Helix 30	AD3	F	621	625	Right-handed 310
Helix 31	AD4	F	627	636	Right-handed alpha
Helix 32	AD5	F	638	661	Right-handed alpha
Helix 33	AD6	F	662	664	Right-handed 310
Helix 34	AD7	I	68	73	Right-handed alpha
Helix 35	AD8	I	94	98	Right-handed 310
Helix 36	AD9	I	99	117	Right-handed alpha
Helix 37	AE1	I	122	126	Right-handed 310
Helix 38	AE2	I	137	139	Right-handed 310
Helix 39	AE3	I	205	209	Right-handed 310
Helix 40	AE4	I	334	350	Right-handed alpha
Helix 41	AE5	I	368	373	Right-handed alpha
Helix 42	AE6	I	377	381	Right-handed 310
Helix 43	AE7	I	473	477	Right-handed 310
Helix 44	AE8	J	529	534	Right-handed alpha
Helix 45	AE9	J	536	542	Right-handed alpha
Helix 46	AF1	J	572	595	Right-handed alpha
Helix 47	AF2	J	627	636	Right-handed alpha
Helix 48	AF3	J	638	661	Right-handed alpha
Helix 49	AF4	J	662	664	Right-handed 310

There are 26 sheets in PDB entry 8VH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	497	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	Z	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	140	162	anti-parallel
Strand 3	A	129	136	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	330	333	anti-parallel
Strand 4	A	414	421	anti-parallel
Strand 5	A	382	385	anti-parallel
Strand 6	A	374	376	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	454	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	316	323	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	358	361	anti-parallel
Strand 3	A	464	466	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	434	435	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	497	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	485	489	anti-parallel
Strand 3	E	223	227	anti-parallel
Strand 4	E	243	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	215	218	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	140	162	anti-parallel
Strand 3	E	129	136	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	330	333	anti-parallel
Strand 4	E	414	421	anti-parallel
Strand 5	E	382	385	anti-parallel
Strand 6	E	374	376	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	454	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	395	first strand
Strand 2	E	358	361	anti-parallel
Strand 3	E	464	466	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	492	497	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	J	603	609	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	485	489	anti-parallel
Strand 3	I	223	227	anti-parallel
Strand 4	I	243	245	anti-parallel
Strand 5	I	84	85	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	177	first strand
Strand 2	I	140	162	anti-parallel
Strand 3	I	129	136	anti-parallel
Strand 4	I	190	193	anti-parallel
Strand 5	I	181	183	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	330	333	anti-parallel
Strand 4	I	414	421	anti-parallel
Strand 5	I	382	385	anti-parallel
Strand 6	I	374	376	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	454	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	308	first strand
Strand 2	I	316	323	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	394	395	first strand
Strand 2	I	358	361	anti-parallel
Strand 3	I	464	466	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	424	first strand
Strand 2	I	434	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH3