Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VH4 entry

There are 2 chains in PDB entry 8VH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	GLU 2527
B	ALA 39	PRO 209

There are105 helices in PDB entry 8VH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	31	45	Right-handed alpha
Helix 3	AA3	A	60	67	Right-handed alpha
Helix 4	AA4	A	77	92	Right-handed alpha
Helix 5	AA5	A	94	99	Right-handed alpha
Helix 6	AA6	A	114	125	Right-handed alpha
Helix 7	AA7	A	132	143	Right-handed alpha
Helix 8	AA8	A	148	154	Right-handed alpha
Helix 9	AA9	A	158	170	Right-handed alpha
Helix 10	AB1	A	173	178	Right-handed alpha
Helix 11	AB2	A	194	199	Right-handed alpha
Helix 12	AB3	A	203	215	Right-handed alpha
Helix 13	AB4	A	218	231	Right-handed alpha
Helix 14	AB5	A	238	244	Right-handed alpha
Helix 15	AB6	A	250	258	Right-handed alpha
Helix 16	AB7	A	263	278	Right-handed alpha
Helix 17	AB8	A	288	292	Right-handed 310
Helix 18	AB9	A	293	302	Right-handed alpha
Helix 19	AC1	A	305	319	Right-handed alpha
Helix 20	AC2	A	319	326	Right-handed alpha
Helix 21	AC3	A	347	360	Right-handed alpha
Helix 22	AC4	A	364	379	Right-handed alpha
Helix 23	AC5	A	380	381	Right-handed 310
Helix 24	AC6	A	382	388	Right-handed 310
Helix 25	AC7	A	396	408	Right-handed alpha
Helix 26	AC8	A	411	428	Right-handed alpha
Helix 27	AC9	A	431	434	Right-handed 310
Helix 28	AD1	A	435	440	Right-handed alpha
Helix 29	AD2	A	440	452	Right-handed alpha
Helix 30	AD3	A	455	471	Right-handed alpha
Helix 31	AD4	A	477	490	Right-handed alpha
Helix 32	AD5	A	497	503	Right-handed alpha
Helix 33	AD6	A	503	508	Right-handed alpha
Helix 34	AD7	A	509	511	Right-handed 310
Helix 35	AD8	A	526	540	Right-handed alpha
Helix 36	AD9	A	541	552	Right-handed alpha
Helix 37	AE1	A	556	570	Right-handed alpha
Helix 38	AE2	A	575	580	Right-handed alpha
Helix 39	AE3	A	585	595	Right-handed alpha
Helix 40	AE4	A	599	613	Right-handed alpha
Helix 41	AE5	A	623	638	Right-handed alpha
Helix 42	AE6	A	642	659	Right-handed alpha
Helix 43	AE7	A	663	669	Right-handed alpha
Helix 44	AE8	A	671	685	Right-handed alpha
Helix 45	AE9	A	688	704	Right-handed alpha
Helix 46	AF1	A	705	719	Right-handed alpha
Helix 47	AF2	A	721	732	Right-handed alpha
Helix 48	AF3	A	743	751	Right-handed alpha
Helix 49	AF4	A	754	764	Right-handed alpha
Helix 50	AF5	A	767	781	Right-handed alpha
Helix 51	AF6	A	783	795	Right-handed alpha
Helix 52	AF7	A	798	801	Right-handed 310
Helix 53	AF8	A	834	851	Right-handed alpha
Helix 54	AF9	A	997	1002	Right-handed alpha
Helix 55	AG1	A	1006	1013	Right-handed 310
Helix 56	AG2	A	1027	1034	Right-handed alpha
Helix 57	AG3	A	1053	1057	Right-handed 310
Helix 58	AG4	A	1189	1194	Right-handed alpha
Helix 59	AG5	A	1261	1267	Right-handed 310
Helix 60	AG6	A	1285	1291	Right-handed 310
Helix 61	AG7	A	1315	1328	Right-handed alpha
Helix 62	AG8	A	1348	1356	Right-handed alpha
Helix 63	AG9	A	1404	1409	Right-handed 310
Helix 64	AH1	A	1420	1424	Right-handed 310
Helix 65	AH2	A	1427	1430	Right-handed 310
Helix 66	AH3	A	1431	1442	Right-handed alpha
Helix 67	AH4	A	1466	1473	Right-handed alpha
Helix 68	AH5	A	1494	1510	Right-handed alpha
Helix 69	AH6	A	1517	1521	Right-handed 310
Helix 70	AH7	A	1524	1538	Right-handed alpha
Helix 71	AH8	A	1549	1560	Right-handed alpha
Helix 72	AH9	A	1568	1579	Right-handed alpha
Helix 73	AI1	A	1599	1610	Right-handed alpha
Helix 74	AI2	A	1645	1655	Right-handed alpha
Helix 75	AI3	A	1703	1713	Right-handed alpha
Helix 76	AI4	A	1770	1792	Right-handed alpha
Helix 77	AI5	A	1828	1835	Right-handed alpha
Helix 78	AI6	A	1852	1856	Right-handed alpha
Helix 79	AI7	A	1865	1869	Right-handed 310
Helix 80	AI8	A	1881	1886	Right-handed alpha
Helix 81	AI9	A	1913	1924	Right-handed alpha
Helix 82	AJ1	A	1954	1962	Right-handed alpha
Helix 83	AJ2	A	1969	1988	Right-handed alpha
Helix 84	AJ3	A	2017	2022	Right-handed 310
Helix 85	AJ4	A	2040	2045	Right-handed alpha
Helix 86	AJ5	A	2053	2068	Right-handed alpha
Helix 87	AJ6	A	2070	2077	Right-handed alpha
Helix 88	AJ7	A	2079	2085	Right-handed alpha
Helix 89	AJ8	A	2086	2089	Right-handed 310
Helix 90	AJ9	A	2094	2099	Right-handed alpha
Helix 91	AK1	A	2104	2114	Right-handed alpha
Helix 92	AK2	A	2124	2133	Right-handed alpha
Helix 93	AK3	A	2134	2139	Right-handed alpha
Helix 94	AK4	A	2208	2211	Right-handed 310
Helix 95	AK5	A	2346	2351	Right-handed alpha
Helix 96	AK6	A	2390	2396	Right-handed 310
Helix 97	AK7	A	2499	2525	Right-handed alpha
Helix 98	AK8	B	54	64	Right-handed alpha
Helix 99	AK9	B	104	109	Right-handed alpha
Helix 100	AL1	B	110	112	Right-handed 310
Helix 101	AL2	B	127	132	Right-handed alpha
Helix 102	AL3	B	132	144	Right-handed alpha
Helix 103	AL4	B	156	163	Right-handed 310
Helix 104	AL5	B	168	174	Right-handed alpha
Helix 105	AL6	B	192	206	Right-handed alpha

There are 21 sheets in PDB entry 8VH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	797	first strand
Strand 2	A	802	803	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1016	1017	first strand
Strand 2	A	1040	1041	parallel
Strand 3	A	1063	1064	parallel
Strand 4	A	1087	1089	parallel
Strand 5	A	1111	1113	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1179	first strand
Strand 2	A	1200	1202	parallel
Strand 3	A	1224	1226	parallel
Strand 4	A	1249	1251	parallel
Strand 5	A	1272	1274	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1376	1379	first strand
Strand 2	A	1387	1394	anti-parallel
Strand 3	A	1334	1339	parallel
Strand 4	A	1413	1418	parallel
Strand 5	A	1447	1450	parallel
Strand 6	A	1482	1486	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1582	1583	first strand
Strand 2	A	1597	1598	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1690	1691	first strand
Strand 2	A	1765	1768	anti-parallel
Strand 3	A	1749	1750	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1741	1743	first strand
Strand 2	A	1746	1747	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1813	1814	first strand
Strand 2	A	1825	1826	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1876	first strand
Strand 2	A	1896	1898	anti-parallel
Strand 3	A	1901	1907	anti-parallel
Strand 4	A	1892	1893	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1876	first strand
Strand 2	A	1896	1898	anti-parallel
Strand 3	A	1901	1907	anti-parallel
Strand 4	A	1944	1948	anti-parallel
Strand 5	A	1935	1939	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2144	first strand
Strand 2	A	2492	2497	anti-parallel
Strand 3	A	2469	2475	anti-parallel
Strand 4	A	2454	2461	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2157	first strand
Strand 2	A	2166	2169	anti-parallel
Strand 3	A	2178	2183	anti-parallel
Strand 4	A	2189	2193	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2225	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2247	2249	first strand
Strand 2	A	2262	2266	anti-parallel
Strand 3	A	2273	2276	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2303	first strand
Strand 2	A	2316	2319	anti-parallel
Strand 3	A	2322	2325	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2362	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2385	2388	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2433	2438	anti-parallel
Strand 4	A	2444	2449	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	89	93	parallel
Strand 3	B	82	86	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	46	49	parallel
Strand 3	B	117	123	parallel
Strand 4	B	149	155	parallel
Strand 5	B	181	182	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH4