Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VH8 entry

There are 2 chains in PDB entry 8VH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 101	PRO 644
B	THR 101	LEU 248

There are101 helices in PDB entry 8VH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	114	Right-handed alpha
Helix 2	AA2	A	141	151	Right-handed alpha
Helix 3	AA3	A	169	179	Right-handed alpha
Helix 4	AA4	A	194	206	Right-handed alpha
Helix 5	AA5	A	223	234	Right-handed alpha
Helix 6	AA6	A	274	281	Right-handed alpha
Helix 7	AA7	A	289	303	Right-handed alpha
Helix 8	AA8	A	324	327	Right-handed 310
Helix 9	AA9	A	342	359	Right-handed alpha
Helix 10	AB1	A	363	368	Right-handed alpha
Helix 11	AB2	A	380	384	Right-handed 310
Helix 12	AB3	A	400	402	Right-handed 310
Helix 13	AB4	A	403	415	Right-handed alpha
Helix 14	AB5	A	432	437	Right-handed alpha
Helix 15	AB6	A	438	440	Right-handed 310
Helix 16	AB7	A	449	453	Right-handed 310
Helix 17	AB8	A	454	459	Right-handed 310
Helix 18	AB9	A	460	469	Right-handed alpha
Helix 19	AC1	A	487	499	Right-handed alpha
Helix 20	AC2	A	552	554	Right-handed 310
Helix 21	AC3	A	558	562	Right-handed 310
Helix 22	AC4	A	567	579	Right-handed alpha
Helix 23	AC5	A	611	621	Right-handed alpha
Helix 24	AC6	A	624	634	Right-handed alpha
Helix 25	AC7	A	636	640	Right-handed 310
Helix 26	AC8	B	103	114	Right-handed alpha
Helix 27	AC9	B	141	151	Right-handed alpha
Helix 28	AD1	B	169	179	Right-handed alpha
Helix 29	AD2	B	194	206	Right-handed alpha
Helix 30	AD3	B	223	234	Right-handed alpha
Helix 31	AD4	B	274	281	Right-handed alpha
Helix 32	AD5	B	289	303	Right-handed alpha
Helix 33	AD6	B	323	327	Right-handed 310
Helix 34	AD7	B	342	359	Right-handed alpha
Helix 35	AD8	B	363	368	Right-handed alpha
Helix 36	AD9	B	380	384	Right-handed 310
Helix 37	AE1	B	400	402	Right-handed 310
Helix 38	AE2	B	403	415	Right-handed alpha
Helix 39	AE3	B	432	437	Right-handed alpha
Helix 40	AE4	B	438	440	Right-handed 310
Helix 41	AE5	B	449	453	Right-handed 310
Helix 42	AE6	B	454	459	Right-handed 310
Helix 43	AE7	B	460	469	Right-handed alpha
Helix 44	AE8	B	487	499	Right-handed alpha
Helix 45	AE9	B	552	554	Right-handed 310
Helix 46	AF1	B	558	562	Right-handed 310
Helix 47	AF2	B	567	579	Right-handed alpha
Helix 48	AF3	B	613	621	Right-handed alpha
Helix 49	AF4	B	624	634	Right-handed alpha
Helix 50	AF5	B	636	640	Right-handed 310
Helix 51	AF6	C	103	114	Right-handed alpha
Helix 52	AF7	C	141	151	Right-handed alpha
Helix 53	AF8	C	169	179	Right-handed alpha
Helix 54	AF9	C	194	206	Right-handed alpha
Helix 55	AG1	C	223	233	Right-handed alpha
Helix 56	AG2	C	274	281	Right-handed alpha
Helix 57	AG3	C	289	303	Right-handed alpha
Helix 58	AG4	C	323	327	Right-handed 310
Helix 59	AG5	C	342	359	Right-handed alpha
Helix 60	AG6	C	363	368	Right-handed alpha
Helix 61	AG7	C	380	384	Right-handed 310
Helix 62	AG8	C	400	402	Right-handed 310
Helix 63	AG9	C	403	415	Right-handed alpha
Helix 64	AH1	C	416	418	Right-handed 310
Helix 65	AH2	C	432	437	Right-handed alpha
Helix 66	AH3	C	438	440	Right-handed 310
Helix 67	AH4	C	449	453	Right-handed 310
Helix 68	AH5	C	454	459	Right-handed 310
Helix 69	AH6	C	460	469	Right-handed alpha
Helix 70	AH7	C	487	499	Right-handed alpha
Helix 71	AH8	C	552	554	Right-handed 310
Helix 72	AH9	C	558	562	Right-handed 310
Helix 73	AI1	C	567	579	Right-handed alpha
Helix 74	AI2	C	611	621	Right-handed alpha
Helix 75	AI3	C	624	634	Right-handed alpha
Helix 76	AI4	C	636	643	Right-handed 310
Helix 77	AI5	D	103	114	Right-handed alpha
Helix 78	AI6	D	141	151	Right-handed alpha
Helix 79	AI7	D	169	179	Right-handed alpha
Helix 80	AI8	D	194	206	Right-handed alpha
Helix 81	AI9	D	223	235	Right-handed alpha
Helix 82	AJ1	D	274	281	Right-handed alpha
Helix 83	AJ2	D	289	303	Right-handed alpha
Helix 84	AJ3	D	323	327	Right-handed 310
Helix 85	AJ4	D	342	359	Right-handed alpha
Helix 86	AJ5	D	360	362	Right-handed 310
Helix 87	AJ6	D	363	368	Right-handed alpha
Helix 88	AJ7	D	380	384	Right-handed 310
Helix 89	AJ8	D	400	402	Right-handed 310
Helix 90	AJ9	D	403	415	Right-handed alpha
Helix 91	AK1	D	416	418	Right-handed 310
Helix 92	AK2	D	432	439	Right-handed alpha
Helix 93	AK3	D	449	453	Right-handed 310
Helix 94	AK4	D	454	459	Right-handed 310
Helix 95	AK5	D	460	469	Right-handed alpha
Helix 96	AK6	D	487	499	Right-handed alpha
Helix 97	AK7	D	552	554	Right-handed 310
Helix 98	AK8	D	558	562	Right-handed 310
Helix 99	AK9	D	567	579	Right-handed alpha
Helix 100	AL1	D	611	621	Right-handed alpha
Helix 101	AL2	D	624	634	Right-handed alpha

There are 24 sheets in PDB entry 8VH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	157	164	parallel
Strand 3	A	129	135	parallel
Strand 4	A	210	213	parallel
Strand 5	A	271	273	anti-parallel
Strand 6	A	240	248	anti-parallel
Strand 7	A	264	265	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	307	318	anti-parallel
Strand 3	A	240	248	parallel
Strand 4	A	255	258	anti-parallel
Strand 5	A	336	339	parallel
Strand 6	A	329	331	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	420	426	parallel
Strand 3	A	393	399	parallel
Strand 4	A	474	478	parallel
Strand 5	A	546	550	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	483	first strand
Strand 2	A	594	595	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	506	first strand
Strand 2	A	583	585	parallel
Strand 3	A	537	539	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	509	511	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	157	164	parallel
Strand 3	B	129	135	parallel
Strand 4	B	210	213	parallel
Strand 5	B	271	273	anti-parallel
Strand 6	B	240	248	anti-parallel
Strand 7	B	264	265	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	307	318	anti-parallel
Strand 3	B	240	248	parallel
Strand 4	B	255	258	anti-parallel
Strand 5	B	336	339	parallel
Strand 6	B	329	331	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	447	first strand
Strand 2	B	420	426	parallel
Strand 3	B	393	399	parallel
Strand 4	B	474	478	parallel
Strand 5	B	548	550	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	483	first strand
Strand 2	B	594	595	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	506	first strand
Strand 2	B	583	585	parallel
Strand 3	B	537	539	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	527	first strand
Strand 2	B	509	511	anti-parallel
Strand 3	B	541	542	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	157	164	parallel
Strand 3	C	129	135	parallel
Strand 4	C	210	213	parallel
Strand 5	C	271	273	anti-parallel
Strand 6	C	240	248	anti-parallel
Strand 7	C	264	265	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	307	318	anti-parallel
Strand 3	C	240	248	parallel
Strand 4	C	255	258	anti-parallel
Strand 5	C	336	339	parallel
Strand 6	C	329	331	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	420	426	parallel
Strand 3	C	393	399	parallel
Strand 4	C	474	478	parallel
Strand 5	C	546	550	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	483	first strand
Strand 2	C	594	595	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	504	506	first strand
Strand 2	C	583	585	parallel
Strand 3	C	537	539	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	527	first strand
Strand 2	C	509	511	anti-parallel
Strand 3	C	541	542	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	157	164	parallel
Strand 3	D	129	135	parallel
Strand 4	D	210	213	parallel
Strand 5	D	271	273	anti-parallel
Strand 6	D	240	248	anti-parallel
Strand 7	D	264	265	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	307	318	anti-parallel
Strand 3	D	240	248	parallel
Strand 4	D	255	258	anti-parallel
Strand 5	D	336	339	parallel
Strand 6	D	329	333	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	447	first strand
Strand 2	D	420	426	parallel
Strand 3	D	393	399	parallel
Strand 4	D	474	478	parallel
Strand 5	D	546	550	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	483	first strand
Strand 2	D	594	595	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	506	first strand
Strand 2	D	583	585	parallel
Strand 3	D	537	539	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	527	first strand
Strand 2	D	509	511	anti-parallel
Strand 3	D	541	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VH8