Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VHF entry

There are 5 chains in PDB entry 8VHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 13	ASN 351
C	ALA 7	ARG 62
N	GLN 1	HIS 129
A	ASP 11	LEU 394
R	PHE 5	VAL 300

There are 25 helices in PDB entry 8VHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	37	Right-handed alpha
Helix 2	AA2	B	40	45	Right-handed alpha
Helix 3	AA3	C	8	23	Right-handed alpha
Helix 4	AA4	C	29	43	Right-handed alpha
Helix 5	AA5	N	28	32	Right-handed 310
Helix 6	AA6	N	87	91	Right-handed 310
Helix 7	AA7	A	12	39	Right-handed alpha
Helix 8	AA8	A	52	58	Right-handed alpha
Helix 9	AA9	A	235	239	Right-handed 310
Helix 10	AB1	A	264	278	Right-handed alpha
Helix 11	AB2	A	281	285	Right-handed 310
Helix 12	AB3	A	293	303	Right-handed alpha
Helix 13	AB4	A	331	350	Right-handed alpha
Helix 14	AB5	A	370	391	Right-handed alpha
Helix 15	AB6	R	6	37	Right-handed alpha
Helix 16	AB7	R	39	66	Right-handed alpha
Helix 17	AB8	R	74	109	Right-handed alpha
Helix 18	AB9	R	109	114	Right-handed alpha
Helix 19	AC1	R	118	143	Right-handed alpha
Helix 20	AC2	R	163	173	Right-handed alpha
Helix 21	AC3	R	174	209	Right-handed alpha
Helix 22	AC4	R	221	249	Right-handed alpha
Helix 23	AC5	R	256	263	Right-handed alpha
Helix 24	AC6	R	264	280	Right-handed alpha
Helix 25	AC7	R	283	300	Right-handed alpha

There are 10 sheets in PDB entry 8VHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	346	350	anti-parallel
Strand 3	B	338	341	anti-parallel
Strand 4	B	328	331	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	82	85	anti-parallel
Strand 3	B	89	92	anti-parallel
Strand 4	B	102	105	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	132	135	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	164	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	187	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	218	223	anti-parallel
Strand 4	B	229	234	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	245	first strand
Strand 2	B	251	256	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	270	275	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	8	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	213	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHF