Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VHG entry

There are 4 chains in PDB entry 8VHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13SER 355
B
 GLU 75VAL 440
C
 G 3 C 20
D
 G 3 C 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8VHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 40Right-handed alpha
Helix 2
AA2
A
52 69Right-handed alpha
Helix 3
AA3
A
113 118Right-handed 310
Helix 4
AA4
A
123 127Right-handed 310
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
140 148Right-handed alpha
Helix 7
AA7
A
260 265Right-handed alpha
Helix 8
AA8
A
283 299Right-handed alpha
Helix 9
AA9
B
77 99Right-handed alpha
Helix 10
AB1
B
112 124Right-handed alpha
Helix 11
AB2
B
147 155Right-handed alpha
Helix 12
AB3
B
192 196Right-handed 310
Helix 13
AB4
B
197 207Right-handed alpha
Helix 14
AB5
B
356 361Right-handed alpha
Helix 15
AB6
B
372 377Right-handed alpha
Helix 16
AB7
B
381 394Right-handed alpha
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There are 5 sheets in PDB entry 8VHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
194 199anti-parallel
Strand 5
A
168 169anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
337 340anti-parallel
Strand 4
A
322 325anti-parallel
Strand 5
A
302 303anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
316 319anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
159 162anti-parallel
Strand 3
B
313 319anti-parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
245 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 424first strand
Strand 2
B
431 436anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il