Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VHH entry

There are 2 chains in PDB entry 8VHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 390
B
 LYS 2ARG 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8VHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 31Right-handed alpha
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
75 81Right-handed 310
Helix 6
AA6
A
82 97Right-handed alpha
Helix 7
AA7
A
109 122Right-handed alpha
Helix 8
AA8
A
132 138Right-handed alpha
Helix 9
AA9
A
138 148Right-handed alpha
Helix 10
AB1
A
161 176Right-handed alpha
Helix 11
AB2
A
192 202Right-handed alpha
Helix 12
AB3
A
202 217Right-handed alpha
Helix 13
AB4
A
230 238Right-handed alpha
Helix 14
AB5
A
239 241Right-handed 310
Helix 15
AB6
A
264 269Right-handed alpha
Helix 16
AB7
A
296 300Right-handed 310
Helix 17
AB8
A
305 314Right-handed alpha
Helix 18
AB9
A
323 339Right-handed alpha
Helix 19
AC1
A
345 352Right-handed alpha
Helix 20
AC2
A
353 355Right-handed 310
Helix 21
AC3
A
371 373Right-handed 310
Helix 22
AC4
A
374 381Right-handed alpha
Helix 23
AC5
A
381 389Right-handed alpha
Helix 24
AC6
B
14 16Right-handed 310
Helix 25
AC7
B
17 30Right-handed alpha
Helix 26
AC8
B
34 48Right-handed alpha
Helix 27
AC9
B
58 66Right-handed alpha
Helix 28
AD1
B
75 81Right-handed 310
Helix 29
AD2
B
82 97Right-handed alpha
Helix 30
AD3
B
109 123Right-handed alpha
Helix 31
AD4
B
132 138Right-handed alpha
Helix 32
AD5
B
138 148Right-handed alpha
Helix 33
AD6
B
166 176Right-handed alpha
Helix 34
AD7
B
192 202Right-handed alpha
Helix 35
AD8
B
202 212Right-handed alpha
Helix 36
AD9
B
212 217Right-handed alpha
Helix 37
AE1
B
230 238Right-handed alpha
Helix 38
AE2
B
239 241Right-handed 310
Helix 39
AE3
B
256 260Right-handed 310
Helix 40
AE4
B
264 269Right-handed alpha
Helix 41
AE5
B
296 300Right-handed 310
Helix 42
AE6
B
305 314Right-handed alpha
Helix 43
AE7
B
323 339Right-handed alpha
Helix 44
AE8
B
343 352Right-handed alpha
Helix 45
AE9
B
371 373Right-handed 310
Helix 46
AF1
B
374 380Right-handed alpha
Helix 47
AF2
B
381 387Right-handed alpha
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There are 8 sheets in PDB entry 8VHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
8 9anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
362 367parallel
Strand 4
A
222 226parallel
Strand 5
A
246 252parallel
Strand 6
A
318 322parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
125 131parallel
Strand 3
A
101 106parallel
Strand 4
A
180 183parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
277 281anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
8 9anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
362 367parallel
Strand 4
B
222 226parallel
Strand 5
B
246 252parallel
Strand 6
B
318 322parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
125 131parallel
Strand 3
B
101 105parallel
Strand 4
B
180 182parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 274first strand
Strand 2
B
277 281anti-parallel
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