Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VHN entry

There are 2 chains in PDB entry 8VHN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ASP 736
B
 LEU 5HIS 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8VHN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
76 95Right-handed alpha
Helix 5
AA5
A
101 112Right-handed alpha
Helix 6
AA6
A
117 123Right-handed alpha
Helix 7
AA7
A
124 135Right-handed alpha
Helix 8
AA8
A
136 143Right-handed 310
Helix 9
AA9
A
144 155Right-handed alpha
Helix 10
AB1
A
168 181Right-handed alpha
Helix 11
AB2
A
188 202Right-handed alpha
Helix 12
AB3
A
208 215Right-handed alpha
Helix 13
AB4
A
233 249Right-handed alpha
Helix 14
AB5
A
277 290Right-handed alpha
Helix 15
AB6
A
312 317Right-handed alpha
Helix 16
AB7
A
325 329Right-handed 310
Helix 17
AB8
A
340 350Right-handed alpha
Helix 18
AB9
A
357 361Right-handed 310
Helix 19
AC1
A
363 371Right-handed alpha
Helix 20
AC2
A
371 384Right-handed alpha
Helix 21
AC3
A
395 410Right-handed alpha
Helix 22
AC4
A
418 423Right-handed alpha
Helix 23
AC5
A
474 476Right-handed 310
Helix 24
AC6
A
477 496Right-handed alpha
Helix 25
AC7
A
500 511Right-handed alpha
Helix 26
AC8
A
519 527Right-handed alpha
Helix 27
AC9
A
536 563Right-handed alpha
Helix 28
AD1
A
567 571Right-handed 310
Helix 29
AD2
A
572 576Right-handed 310
Helix 30
AD3
A
578 583Right-handed alpha
Helix 31
AD4
A
584 590Right-handed 310
Helix 32
AD5
A
598 610Right-handed alpha
Helix 33
AD6
A
622 629Right-handed alpha
Helix 34
AD7
A
658 663Right-handed alpha
Helix 35
AD8
A
668 672Right-handed 310
Helix 36
AD9
A
675 687Right-handed alpha
Helix 37
AE1
A
700 708Right-handed 310
Helix 38
AE2
A
710 724Right-handed alpha
Helix 39
AE3
B
18 31Right-handed alpha
Helix 40
AE4
B
37 47Right-handed alpha
Helix 41
AE5
B
55 69Right-handed alpha
Helix 42
AE6
B
76 95Right-handed alpha
Helix 43
AE7
B
101 112Right-handed alpha
Helix 44
AE8
B
117 123Right-handed alpha
Helix 45
AE9
B
124 135Right-handed alpha
Helix 46
AF1
B
136 143Right-handed 310
Helix 47
AF2
B
144 155Right-handed alpha
Helix 48
AF3
B
168 181Right-handed alpha
Helix 49
AF4
B
188 202Right-handed alpha
Helix 50
AF5
B
208 215Right-handed alpha
Helix 51
AF6
B
233 249Right-handed alpha
Helix 52
AF7
B
277 290Right-handed alpha
Helix 53
AF8
B
312 317Right-handed alpha
Helix 54
AF9
B
325 329Right-handed 310
Helix 55
AG1
B
340 350Right-handed alpha
Helix 56
AG2
B
357 361Right-handed 310
Helix 57
AG3
B
363 371Right-handed alpha
Helix 58
AG4
B
371 384Right-handed alpha
Helix 59
AG5
B
395 410Right-handed alpha
Helix 60
AG6
B
418 423Right-handed alpha
Helix 61
AG7
B
474 476Right-handed 310
Helix 62
AG8
B
477 496Right-handed alpha
Helix 63
AG9
B
500 511Right-handed alpha
Helix 64
AH1
B
519 527Right-handed alpha
Helix 65
AH2
B
536 563Right-handed alpha
Helix 66
AH3
B
567 571Right-handed 310
Helix 67
AH4
B
572 576Right-handed 310
Helix 68
AH5
B
578 583Right-handed alpha
Helix 69
AH6
B
584 590Right-handed 310
Helix 70
AH7
B
598 610Right-handed alpha
Helix 71
AH8
B
623 629Right-handed alpha
Helix 72
AH9
B
658 663Right-handed alpha
Helix 73
AI1
B
668 672Right-handed 310
Helix 74
AI2
B
675 687Right-handed alpha
Helix 75
AI3
B
700 708Right-handed 310
Helix 76
AI4
B
710 724Right-handed alpha
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There are 13 sheets in PDB entry 8VHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
6 8anti-parallel
Strand 3
A
53 54parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
463 468anti-parallel
Strand 3
A
513 518parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 461first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
253 257parallel
Strand 4
A
302 307parallel
Strand 5
A
334 339parallel
Strand 6
A
412 416parallel
Strand 7
A
728 729anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
391 394anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 647first strand
Strand 2
A
650 655anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 699first strand
Strand 2
A
732 734parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
6 8anti-parallel
Strand 3
B
53 54parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
463 468anti-parallel
Strand 3
B
513 518parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 461first strand
Strand 2
B
225 229anti-parallel
Strand 3
B
253 257parallel
Strand 4
B
302 307parallel
Strand 5
B
334 339parallel
Strand 6
B
412 416parallel
Strand 7
B
728 729anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
273 274anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
391 394anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
642 647first strand
Strand 2
B
650 655anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
697 699first strand
Strand 2
B
732 734parallel
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