Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VHR entry

There are 2 chains in PDB entry 8VHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	ASP 736
B	LEU 5	LYS 529

There are149 helices in PDB entry 8VHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	37	47	Right-handed alpha
Helix 3	AA3	A	55	68	Right-handed alpha
Helix 4	AA4	A	76	95	Right-handed alpha
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	117	123	Right-handed alpha
Helix 7	AA7	A	124	135	Right-handed alpha
Helix 8	AA8	A	136	143	Right-handed 310
Helix 9	AA9	A	144	154	Right-handed alpha
Helix 10	AB1	A	168	181	Right-handed alpha
Helix 11	AB2	A	185	202	Right-handed alpha
Helix 12	AB3	A	208	213	Right-handed alpha
Helix 13	AB4	A	233	249	Right-handed alpha
Helix 14	AB5	A	278	290	Right-handed alpha
Helix 15	AB6	A	291	293	Right-handed 310
Helix 16	AB7	A	312	317	Right-handed alpha
Helix 17	AB8	A	325	329	Right-handed 310
Helix 18	AB9	A	340	350	Right-handed alpha
Helix 19	AC1	A	363	371	Right-handed alpha
Helix 20	AC2	A	371	384	Right-handed alpha
Helix 21	AC3	A	395	409	Right-handed alpha
Helix 22	AC4	A	418	423	Right-handed alpha
Helix 23	AC5	A	474	476	Right-handed 310
Helix 24	AC6	A	477	494	Right-handed alpha
Helix 25	AC7	A	500	511	Right-handed alpha
Helix 26	AC8	A	519	527	Right-handed alpha
Helix 27	AC9	A	536	563	Right-handed alpha
Helix 28	AD1	A	567	571	Right-handed 310
Helix 29	AD2	A	572	576	Right-handed 310
Helix 30	AD3	A	584	590	Right-handed 310
Helix 31	AD4	A	598	610	Right-handed alpha
Helix 32	AD5	A	624	629	Right-handed alpha
Helix 33	AD6	A	658	663	Right-handed alpha
Helix 34	AD7	A	668	672	Right-handed 310
Helix 35	AD8	A	675	687	Right-handed alpha
Helix 36	AD9	A	700	708	Right-handed 310
Helix 37	AE1	A	710	724	Right-handed alpha
Helix 38	AE2	B	18	30	Right-handed alpha
Helix 39	AE3	B	37	47	Right-handed alpha
Helix 40	AE4	B	55	68	Right-handed alpha
Helix 41	AE5	B	76	95	Right-handed alpha
Helix 42	AE6	B	101	112	Right-handed alpha
Helix 43	AE7	B	117	123	Right-handed alpha
Helix 44	AE8	B	124	135	Right-handed alpha
Helix 45	AE9	B	136	143	Right-handed 310
Helix 46	AF1	B	144	154	Right-handed alpha
Helix 47	AF2	B	168	181	Right-handed alpha
Helix 48	AF3	B	185	202	Right-handed alpha
Helix 49	AF4	B	208	213	Right-handed alpha
Helix 50	AF5	B	233	249	Right-handed alpha
Helix 51	AF6	B	278	290	Right-handed alpha
Helix 52	AF7	B	291	293	Right-handed 310
Helix 53	AF8	B	312	317	Right-handed alpha
Helix 54	AF9	B	325	329	Right-handed 310
Helix 55	AG1	B	340	349	Right-handed alpha
Helix 56	AG2	B	363	371	Right-handed alpha
Helix 57	AG3	B	371	384	Right-handed alpha
Helix 58	AG4	B	395	410	Right-handed alpha
Helix 59	AG5	B	418	423	Right-handed alpha
Helix 60	AG6	B	474	476	Right-handed 310
Helix 61	AG7	B	477	494	Right-handed alpha
Helix 62	AG8	B	500	511	Right-handed alpha
Helix 63	AG9	B	519	527	Right-handed alpha
Helix 64	AH1	B	536	563	Right-handed alpha
Helix 65	AH2	B	567	571	Right-handed 310
Helix 66	AH3	B	572	576	Right-handed 310
Helix 67	AH4	B	584	590	Right-handed 310
Helix 68	AH5	B	598	610	Right-handed alpha
Helix 69	AH6	B	624	629	Right-handed alpha
Helix 70	AH7	B	658	663	Right-handed alpha
Helix 71	AH8	B	668	672	Right-handed 310
Helix 72	AH9	B	675	687	Right-handed alpha
Helix 73	AI1	B	700	708	Right-handed 310
Helix 74	AI2	B	710	724	Right-handed alpha
Helix 75	AI3	C	18	30	Right-handed alpha
Helix 76	AI4	C	37	47	Right-handed alpha
Helix 77	AI5	C	55	68	Right-handed alpha
Helix 78	AI6	C	76	95	Right-handed alpha
Helix 79	AI7	C	101	112	Right-handed alpha
Helix 80	AI8	C	117	123	Right-handed alpha
Helix 81	AI9	C	124	135	Right-handed alpha
Helix 82	AJ1	C	136	143	Right-handed 310
Helix 83	AJ2	C	144	154	Right-handed alpha
Helix 84	AJ3	C	168	181	Right-handed alpha
Helix 85	AJ4	C	188	202	Right-handed alpha
Helix 86	AJ5	C	208	213	Right-handed alpha
Helix 87	AJ6	C	233	249	Right-handed alpha
Helix 88	AJ7	C	278	290	Right-handed alpha
Helix 89	AJ8	C	291	293	Right-handed 310
Helix 90	AJ9	C	312	317	Right-handed alpha
Helix 91	AK1	C	325	329	Right-handed 310
Helix 92	AK2	C	340	350	Right-handed alpha
Helix 93	AK3	C	363	371	Right-handed alpha
Helix 94	AK4	C	371	384	Right-handed alpha
Helix 95	AK5	C	395	410	Right-handed alpha
Helix 96	AK6	C	418	423	Right-handed alpha
Helix 97	AK7	C	474	476	Right-handed 310
Helix 98	AK8	C	477	494	Right-handed alpha
Helix 99	AK9	C	500	511	Right-handed alpha
Helix 100	AL1	C	519	527	Right-handed alpha
Helix 101	AL2	C	536	563	Right-handed alpha
Helix 102	AL3	C	567	571	Right-handed 310
Helix 103	AL4	C	572	576	Right-handed 310
Helix 104	AL5	C	584	590	Right-handed 310
Helix 105	AL6	C	598	610	Right-handed alpha
Helix 106	AL7	C	624	629	Right-handed alpha
Helix 107	AL8	C	658	663	Right-handed alpha
Helix 108	AL9	C	668	672	Right-handed 310
Helix 109	AM1	C	675	687	Right-handed alpha
Helix 110	AM2	C	700	708	Right-handed 310
Helix 111	AM3	C	710	724	Right-handed alpha
Helix 112	AM4	D	18	30	Right-handed alpha
Helix 113	AM5	D	37	47	Right-handed alpha
Helix 114	AM6	D	55	68	Right-handed alpha
Helix 115	AM7	D	76	95	Right-handed alpha
Helix 116	AM8	D	101	112	Right-handed alpha
Helix 117	AM9	D	117	123	Right-handed alpha
Helix 118	AN1	D	124	135	Right-handed alpha
Helix 119	AN2	D	136	143	Right-handed 310
Helix 120	AN3	D	144	154	Right-handed alpha
Helix 121	AN4	D	168	181	Right-handed alpha
Helix 122	AN5	D	185	202	Right-handed alpha
Helix 123	AN6	D	208	213	Right-handed alpha
Helix 124	AN7	D	233	249	Right-handed alpha
Helix 125	AN8	D	278	290	Right-handed alpha
Helix 126	AN9	D	291	293	Right-handed 310
Helix 127	AO1	D	312	317	Right-handed alpha
Helix 128	AO2	D	325	329	Right-handed 310
Helix 129	AO3	D	340	350	Right-handed alpha
Helix 130	AO4	D	363	371	Right-handed alpha
Helix 131	AO5	D	371	384	Right-handed alpha
Helix 132	AO6	D	395	409	Right-handed alpha
Helix 133	AO7	D	418	423	Right-handed alpha
Helix 134	AO8	D	474	476	Right-handed 310
Helix 135	AO9	D	477	494	Right-handed alpha
Helix 136	AP1	D	500	511	Right-handed alpha
Helix 137	AP2	D	519	527	Right-handed alpha
Helix 138	AP3	D	536	563	Right-handed alpha
Helix 139	AP4	D	567	571	Right-handed 310
Helix 140	AP5	D	572	576	Right-handed 310
Helix 141	AP6	D	578	583	Right-handed alpha
Helix 142	AP7	D	584	590	Right-handed 310
Helix 143	AP8	D	598	610	Right-handed alpha
Helix 144	AP9	D	624	629	Right-handed alpha
Helix 145	AQ1	D	658	663	Right-handed alpha
Helix 146	AQ2	D	668	672	Right-handed 310
Helix 147	AQ3	D	675	687	Right-handed alpha
Helix 148	AQ4	D	700	708	Right-handed 310
Helix 149	AQ5	D	710	724	Right-handed alpha

There are 28 sheets in PDB entry 8VHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	6	8	anti-parallel
Strand 3	A	53	54	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	463	468	anti-parallel
Strand 3	A	513	518	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	253	257	parallel
Strand 4	A	302	307	parallel
Strand 5	A	334	339	parallel
Strand 6	A	412	416	parallel
Strand 7	A	728	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	391	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	647	first strand
Strand 2	A	650	655	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	A	732	734	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	6	8	anti-parallel
Strand 3	B	53	54	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	463	468	anti-parallel
Strand 3	B	513	518	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	225	229	anti-parallel
Strand 3	B	253	257	parallel
Strand 4	B	302	307	parallel
Strand 5	B	334	339	parallel
Strand 6	B	412	416	parallel
Strand 7	B	728	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	390	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	647	first strand
Strand 2	B	650	655	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	699	first strand
Strand 2	B	732	734	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	6	8	anti-parallel
Strand 3	C	53	54	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	463	468	anti-parallel
Strand 3	C	513	518	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	225	229	anti-parallel
Strand 3	C	253	257	parallel
Strand 4	C	302	307	parallel
Strand 5	C	334	339	parallel
Strand 6	C	412	416	parallel
Strand 7	C	728	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	356	first strand
Strand 2	C	390	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	647	first strand
Strand 2	C	650	655	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	699	first strand
Strand 2	C	732	734	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	6	8	anti-parallel
Strand 3	D	53	54	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	463	468	anti-parallel
Strand 3	D	513	518	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	461	first strand
Strand 2	D	225	229	anti-parallel
Strand 3	D	253	257	parallel
Strand 4	D	302	307	parallel
Strand 5	D	334	339	parallel
Strand 6	D	412	416	parallel
Strand 7	D	728	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	355	first strand
Strand 2	D	391	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	647	first strand
Strand 2	D	650	655	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	697	699	first strand
Strand 2	D	732	734	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHR