Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VHT entry

There are 3 chains in PDB entry 8VHT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 252	LEU 1028
B	GLU 252	LEU 1028
D	GLU 252	LEU 1028

There are 90 helices in PDB entry 8VHT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	267	291	Right-handed alpha
Helix 2	AA2	A	299	320	Right-handed alpha
Helix 3	AA3	A	321	323	Right-handed 310
Helix 4	AA4	A	331	339	Right-handed alpha
Helix 5	AA5	A	364	377	Right-handed alpha
Helix 6	AA6	A	381	383	Right-handed 310
Helix 7	AA7	A	395	420	Right-handed alpha
Helix 8	AA8	A	425	430	Right-handed alpha
Helix 9	AA9	A	444	472	Right-handed alpha
Helix 10	AB1	A	533	549	Right-handed alpha
Helix 11	AB2	A	567	577	Right-handed alpha
Helix 12	AB3	A	581	583	Right-handed 310
Helix 13	AB4	A	607	613	Right-handed alpha
Helix 14	AB5	A	613	620	Right-handed alpha
Helix 15	AB6	A	635	639	Right-handed alpha
Helix 16	AB7	A	714	721	Right-handed alpha
Helix 17	AB8	A	724	732	Right-handed alpha
Helix 18	AB9	A	743	755	Right-handed alpha
Helix 19	AC1	A	756	760	Right-handed 310
Helix 20	AC2	A	778	788	Right-handed alpha
Helix 21	AC3	A	810	830	Right-handed alpha
Helix 22	AC4	A	845	857	Right-handed alpha
Helix 23	AC5	A	858	860	Right-handed 310
Helix 24	AC6	A	861	879	Right-handed alpha
Helix 25	AC7	A	887	913	Right-handed alpha
Helix 26	AC8	A	915	947	Right-handed alpha
Helix 27	AC9	A	975	977	Right-handed 310
Helix 28	AD1	A	978	1003	Right-handed alpha
Helix 29	AD2	A	1004	1006	Right-handed 310
Helix 30	AD3	A	1008	1024	Right-handed alpha
Helix 31	AD4	B	267	291	Right-handed alpha
Helix 32	AD5	B	299	320	Right-handed alpha
Helix 33	AD6	B	321	323	Right-handed 310
Helix 34	AD7	B	331	339	Right-handed alpha
Helix 35	AD8	B	364	377	Right-handed alpha
Helix 36	AD9	B	381	383	Right-handed 310
Helix 37	AE1	B	395	420	Right-handed alpha
Helix 38	AE2	B	425	430	Right-handed alpha
Helix 39	AE3	B	444	472	Right-handed alpha
Helix 40	AE4	B	533	549	Right-handed alpha
Helix 41	AE5	B	567	577	Right-handed alpha
Helix 42	AE6	B	581	583	Right-handed 310
Helix 43	AE7	B	607	613	Right-handed alpha
Helix 44	AE8	B	613	620	Right-handed alpha
Helix 45	AE9	B	635	639	Right-handed alpha
Helix 46	AF1	B	714	721	Right-handed alpha
Helix 47	AF2	B	724	732	Right-handed alpha
Helix 48	AF3	B	743	755	Right-handed alpha
Helix 49	AF4	B	756	760	Right-handed 310
Helix 50	AF5	B	778	788	Right-handed alpha
Helix 51	AF6	B	810	830	Right-handed alpha
Helix 52	AF7	B	845	857	Right-handed alpha
Helix 53	AF8	B	858	860	Right-handed 310
Helix 54	AF9	B	861	879	Right-handed alpha
Helix 55	AG1	B	887	913	Right-handed alpha
Helix 56	AG2	B	915	947	Right-handed alpha
Helix 57	AG3	B	975	977	Right-handed 310
Helix 58	AG4	B	978	1003	Right-handed alpha
Helix 59	AG5	B	1004	1006	Right-handed 310
Helix 60	AG6	B	1008	1024	Right-handed alpha
Helix 61	AG7	D	267	291	Right-handed alpha
Helix 62	AG8	D	299	320	Right-handed alpha
Helix 63	AG9	D	321	323	Right-handed 310
Helix 64	AH1	D	331	339	Right-handed alpha
Helix 65	AH2	D	364	377	Right-handed alpha
Helix 66	AH3	D	381	383	Right-handed 310
Helix 67	AH4	D	395	420	Right-handed alpha
Helix 68	AH5	D	425	430	Right-handed alpha
Helix 69	AH6	D	444	472	Right-handed alpha
Helix 70	AH7	D	533	549	Right-handed alpha
Helix 71	AH8	D	567	577	Right-handed alpha
Helix 72	AH9	D	581	583	Right-handed 310
Helix 73	AI1	D	607	613	Right-handed alpha
Helix 74	AI2	D	613	620	Right-handed alpha
Helix 75	AI3	D	635	639	Right-handed alpha
Helix 76	AI4	D	714	721	Right-handed alpha
Helix 77	AI5	D	724	732	Right-handed alpha
Helix 78	AI6	D	743	755	Right-handed alpha
Helix 79	AI7	D	756	760	Right-handed 310
Helix 80	AI8	D	778	788	Right-handed alpha
Helix 81	AI9	D	810	830	Right-handed alpha
Helix 82	AJ1	D	845	857	Right-handed alpha
Helix 83	AJ2	D	858	860	Right-handed 310
Helix 84	AJ3	D	861	879	Right-handed alpha
Helix 85	AJ4	D	887	913	Right-handed alpha
Helix 86	AJ5	D	915	947	Right-handed alpha
Helix 87	AJ6	D	975	977	Right-handed 310
Helix 88	AJ7	D	978	1003	Right-handed alpha
Helix 89	AJ8	D	1004	1006	Right-handed 310
Helix 90	AJ9	D	1008	1024	Right-handed alpha

There are 9 sheets in PDB entry 8VHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	262	first strand
Strand 2	A	326	330	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	500	first strand
Strand 2	A	517	522	anti-parallel
Strand 3	A	385	391	parallel
Strand 4	A	351	357	parallel
Strand 5	A	553	558	parallel
Strand 6	A	631	634	anti-parallel
Strand 7	A	585	589	anti-parallel
Strand 8	A	792	795	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	803	806	anti-parallel
Strand 3	A	593	595	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	262	first strand
Strand 2	B	326	330	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	500	first strand
Strand 2	B	517	522	anti-parallel
Strand 3	B	385	391	parallel
Strand 4	B	351	357	parallel
Strand 5	B	553	558	parallel
Strand 6	B	631	634	anti-parallel
Strand 7	B	585	589	anti-parallel
Strand 8	B	792	795	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	563	first strand
Strand 2	B	803	806	anti-parallel
Strand 3	B	593	595	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	262	first strand
Strand 2	D	326	330	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	500	first strand
Strand 2	D	517	522	anti-parallel
Strand 3	D	385	391	parallel
Strand 4	D	351	357	parallel
Strand 5	D	553	558	parallel
Strand 6	D	631	634	anti-parallel
Strand 7	D	585	589	anti-parallel
Strand 8	D	792	795	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	563	first strand
Strand 2	D	803	806	anti-parallel
Strand 3	D	593	595	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VHT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHT