Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VHX entry

There are 8 chains in PDB entry 8VHX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PRO 84
B	THR 2	PRO 84
C	SER 2	PRO 167
D	GLY 36	PHE 531
E	GLY 36	PHE 531
F	ALA 2	ASP 121
G	MET 1	VAL 275
H	TYR 5	SER 379

There are 63 helices in PDB entry 8VHX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	27	Right-handed alpha
Helix 2	AA2	A	47	64	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	B	3	26	Right-handed alpha
Helix 5	AA5	B	47	64	Right-handed alpha
Helix 6	AA6	B	66	73	Right-handed alpha
Helix 7	AA7	C	3	16	Right-handed alpha
Helix 8	AA8	C	17	18	Right-handed 310
Helix 9	AA9	C	19	23	Right-handed 310
Helix 10	AB1	C	40	45	Right-handed alpha
Helix 11	AB2	C	65	68	Right-handed 310
Helix 12	AB3	C	91	107	Right-handed alpha
Helix 13	AB4	C	123	128	Right-handed alpha
Helix 14	AB5	D	38	42	Right-handed 310
Helix 15	AB6	D	57	65	Right-handed alpha
Helix 16	AB7	D	66	80	Right-handed alpha
Helix 17	AB8	D	80	95	Right-handed alpha
Helix 18	AB9	D	115	133	Right-handed alpha
Helix 19	AC1	D	146	162	Right-handed alpha
Helix 20	AC2	D	176	180	Right-handed 310
Helix 21	AC3	D	197	201	Right-handed 310
Helix 22	AC4	D	235	238	Right-handed 310
Helix 23	AC5	D	270	274	Right-handed 310
Helix 24	AC6	D	275	299	Right-handed alpha
Helix 25	AC7	D	308	316	Right-handed alpha
Helix 26	AC8	D	373	388	Right-handed alpha
Helix 27	AC9	D	390	396	Right-handed alpha
Helix 28	AD1	D	402	424	Right-handed alpha
Helix 29	AD2	D	424	444	Right-handed alpha
Helix 30	AD3	D	455	458	Right-handed 310
Helix 31	AD4	D	459	468	Right-handed alpha
Helix 32	AD5	D	483	494	Right-handed alpha
Helix 33	AD6	D	498	506	Right-handed alpha
Helix 34	AD7	D	509	528	Right-handed alpha
Helix 35	AD8	E	57	65	Right-handed alpha
Helix 36	AD9	E	66	80	Right-handed alpha
Helix 37	AE1	E	80	95	Right-handed alpha
Helix 38	AE2	E	106	111	Right-handed alpha
Helix 39	AE3	E	116	133	Right-handed alpha
Helix 40	AE4	E	146	162	Right-handed alpha
Helix 41	AE5	E	176	180	Right-handed 310
Helix 42	AE6	E	191	195	Right-handed 310
Helix 43	AE7	E	197	201	Right-handed 310
Helix 44	AE8	E	234	238	Right-handed 310
Helix 45	AE9	E	270	274	Right-handed 310
Helix 46	AF1	E	275	299	Right-handed alpha
Helix 47	AF2	E	308	317	Right-handed alpha
Helix 48	AF3	E	373	388	Right-handed alpha
Helix 49	AF4	E	390	396	Right-handed alpha
Helix 50	AF5	E	402	424	Right-handed alpha
Helix 51	AF6	E	424	444	Right-handed alpha
Helix 52	AF7	E	453	458	Right-handed 310
Helix 53	AF8	E	459	468	Right-handed alpha
Helix 54	AF9	E	480	494	Right-handed alpha
Helix 55	AG1	E	498	506	Right-handed alpha
Helix 56	AG2	E	509	528	Right-handed alpha
Helix 57	AG3	F	4	21	Right-handed alpha
Helix 58	AG4	F	71	78	Right-handed alpha
Helix 59	AG5	G	81	89	Right-handed alpha
Helix 60	AG6	G	152	156	Right-handed 310
Helix 61	AG7	H	81	89	Right-handed alpha
Helix 62	AG8	H	152	156	Right-handed 310
Helix 63	AG9	H	367	369	Right-handed 310

There are 27 sheets in PDB entry 8VHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	B	40	44	anti-parallel
Strand 4	B	32	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	D	344	345	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	E	343	345	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	49	54	parallel
Strand 3	C	70	84	anti-parallel
Strand 4	C	149	163	anti-parallel
Strand 5	C	131	134	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	70	84	anti-parallel
Strand 3	C	149	163	anti-parallel
Strand 4	C	138	140	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	469	472	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	189	first strand
Strand 2	D	163	170	anti-parallel
Strand 3	D	254	258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	211	213	anti-parallel
Strand 3	D	219	225	anti-parallel
Strand 4	D	240	244	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	304	first strand
Strand 2	D	359	362	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	E	301	304	parallel
Strand 3	E	359	362	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	103	first strand
Strand 2	E	469	472	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	189	first strand
Strand 2	E	163	167	anti-parallel
Strand 3	E	254	258	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	211	213	anti-parallel
Strand 3	E	219	225	anti-parallel
Strand 4	E	240	244	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	27	first strand
Strand 2	F	34	49	anti-parallel
Strand 3	F	60	70	anti-parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	98	104	anti-parallel
Strand 6	F	86	88	anti-parallel
Strand 7	F	22	27	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	14	20	anti-parallel
Strand 3	G	213	221	anti-parallel
Strand 4	G	229	241	anti-parallel
Strand 5	G	254	260	anti-parallel
Strand 6	G	61	77	anti-parallel
Strand 7	G	44	52	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	61	77	anti-parallel
Strand 3	G	254	260	anti-parallel
Strand 4	G	229	241	anti-parallel
Strand 5	G	271	274	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	97	first strand
Strand 2	G	202	207	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	108	first strand
Strand 2	G	190	198	anti-parallel
Strand 3	G	132	141	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	176	179	anti-parallel
Strand 3	G	168	171	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	33	first strand
Strand 2	H	14	21	anti-parallel
Strand 3	H	213	221	anti-parallel
Strand 4	H	228	241	anti-parallel
Strand 5	H	254	260	anti-parallel
Strand 6	H	72	77	anti-parallel
Strand 7	H	39	42	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	33	first strand
Strand 2	H	14	21	anti-parallel
Strand 3	H	213	221	anti-parallel
Strand 4	H	228	241	anti-parallel
Strand 5	H	271	275	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	52	first strand
Strand 2	H	61	70	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	98	first strand
Strand 2	H	201	207	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	108	first strand
Strand 2	H	190	198	anti-parallel
Strand 3	H	132	141	anti-parallel
Strand 4	H	160	161	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	118	first strand
Strand 2	H	176	179	anti-parallel
Strand 3	H	168	171	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	293	first strand
Strand 2	H	305	312	anti-parallel
Strand 3	H	346	353	anti-parallel
Strand 4	H	332	335	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	297	299	first strand
Strand 2	H	372	379	parallel
Strand 3	H	357	365	anti-parallel
Strand 4	H	323	328	anti-parallel
Strand 5	H	338	340	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VHX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHX