Analysis of interatomic Contacts of Structural Units in PDB entry:
8VHZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VHZ entry

There are 3 chains in PDB entry 8VHZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 261VAL 1063
B
 ARG 261VAL 1063
C
 ARG 261VAL 1063
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 8VHZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
271 298Right-handed alpha
Helix 2
AA2
A
304 327Right-handed alpha
Helix 3
AA3
A
338 346Right-handed alpha
Helix 4
AA4
A
371 384Right-handed alpha
Helix 5
AA5
A
388 390Right-handed 310
Helix 6
AA6
A
402 427Right-handed alpha
Helix 7
AA7
A
432 439Right-handed alpha
Helix 8
AA8
A
452 477Right-handed alpha
Helix 9
AA9
A
540 556Right-handed alpha
Helix 10
AB1
A
574 584Right-handed alpha
Helix 11
AB2
A
614 620Right-handed alpha
Helix 12
AB3
A
620 627Right-handed alpha
Helix 13
AB4
A
642 646Right-handed alpha
Helix 14
AB5
A
719 726Right-handed alpha
Helix 15
AB6
A
729 737Right-handed alpha
Helix 16
AB7
A
748 752Right-handed 310
Helix 17
AB8
A
753 761Right-handed alpha
Helix 18
AB9
A
782 793Right-handed alpha
Helix 19
AC1
A
815 836Right-handed alpha
Helix 20
AC2
A
850 863Right-handed alpha
Helix 21
AC3
A
866 883Right-handed alpha
Helix 22
AC4
A
894 918Right-handed alpha
Helix 23
AC5
A
920 938Right-handed alpha
Helix 24
AC6
A
938 953Right-handed alpha
Helix 25
AC7
A
980 982Right-handed 310
Helix 26
AC8
A
983 1008Right-handed alpha
Helix 27
AC9
A
1011 1021Right-handed alpha
Helix 28
AD1
A
1022 1029Right-handed alpha
Helix 29
AD2
A
1029 1037Right-handed alpha
Helix 30
AD3
A
1044 1063Right-handed alpha
Helix 31
AD4
B
271 298Right-handed alpha
Helix 32
AD5
B
304 327Right-handed alpha
Helix 33
AD6
B
338 346Right-handed alpha
Helix 34
AD7
B
371 384Right-handed alpha
Helix 35
AD8
B
388 390Right-handed 310
Helix 36
AD9
B
402 427Right-handed alpha
Helix 37
AE1
B
432 439Right-handed alpha
Helix 38
AE2
B
452 477Right-handed alpha
Helix 39
AE3
B
540 556Right-handed alpha
Helix 40
AE4
B
574 584Right-handed alpha
Helix 41
AE5
B
614 620Right-handed alpha
Helix 42
AE6
B
620 627Right-handed alpha
Helix 43
AE7
B
642 646Right-handed alpha
Helix 44
AE8
B
719 726Right-handed alpha
Helix 45
AE9
B
729 737Right-handed alpha
Helix 46
AF1
B
748 752Right-handed 310
Helix 47
AF2
B
753 761Right-handed alpha
Helix 48
AF3
B
782 793Right-handed alpha
Helix 49
AF4
B
815 836Right-handed alpha
Helix 50
AF5
B
850 863Right-handed alpha
Helix 51
AF6
B
866 883Right-handed alpha
Helix 52
AF7
B
894 918Right-handed alpha
Helix 53
AF8
B
920 938Right-handed alpha
Helix 54
AF9
B
938 953Right-handed alpha
Helix 55
AG1
B
980 982Right-handed 310
Helix 56
AG2
B
983 1008Right-handed alpha
Helix 57
AG3
B
1011 1021Right-handed alpha
Helix 58
AG4
B
1022 1029Right-handed alpha
Helix 59
AG5
B
1029 1037Right-handed alpha
Helix 60
AG6
B
1044 1063Right-handed alpha
Helix 61
AG7
C
271 298Right-handed alpha
Helix 62
AG8
C
304 327Right-handed alpha
Helix 63
AG9
C
338 346Right-handed alpha
Helix 64
AH1
C
371 384Right-handed alpha
Helix 65
AH2
C
388 390Right-handed 310
Helix 66
AH3
C
402 427Right-handed alpha
Helix 67
AH4
C
432 439Right-handed alpha
Helix 68
AH5
C
452 477Right-handed alpha
Helix 69
AH6
C
540 556Right-handed alpha
Helix 70
AH7
C
574 584Right-handed alpha
Helix 71
AH8
C
614 620Right-handed alpha
Helix 72
AH9
C
620 627Right-handed alpha
Helix 73
AI1
C
642 646Right-handed alpha
Helix 74
AI2
C
719 726Right-handed alpha
Helix 75
AI3
C
729 737Right-handed alpha
Helix 76
AI4
C
748 752Right-handed 310
Helix 77
AI5
C
753 761Right-handed alpha
Helix 78
AI6
C
782 793Right-handed alpha
Helix 79
AI7
C
815 836Right-handed alpha
Helix 80
AI8
C
850 863Right-handed alpha
Helix 81
AI9
C
866 883Right-handed alpha
Helix 82
AJ1
C
894 918Right-handed alpha
Helix 83
AJ2
C
920 938Right-handed alpha
Helix 84
AJ3
C
938 953Right-handed alpha
Helix 85
AJ4
C
980 982Right-handed 310
Helix 86
AJ5
C
983 1008Right-handed alpha
Helix 87
AJ6
C
1011 1021Right-handed alpha
Helix 88
AJ7
C
1022 1029Right-handed alpha
Helix 89
AJ8
C
1029 1037Right-handed alpha
Helix 90
AJ9
C
1044 1063Right-handed alpha
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There are 9 sheets in PDB entry 8VHZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
333 337anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 507first strand
Strand 2
A
524 529anti-parallel
Strand 3
A
392 398parallel
Strand 4
A
358 364parallel
Strand 5
A
560 563parallel
Strand 6
A
638 641anti-parallel
Strand 7
A
592 596anti-parallel
Strand 8
A
797 800parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 570first strand
Strand 2
A
808 811anti-parallel
Strand 3
A
599 602parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
333 337anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 507first strand
Strand 2
B
524 529anti-parallel
Strand 3
B
392 398parallel
Strand 4
B
358 364parallel
Strand 5
B
560 563parallel
Strand 6
B
638 641anti-parallel
Strand 7
B
592 596anti-parallel
Strand 8
B
797 800parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 570first strand
Strand 2
B
808 811anti-parallel
Strand 3
B
599 602parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 269first strand
Strand 2
C
333 337anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 507first strand
Strand 2
C
524 529anti-parallel
Strand 3
C
392 398parallel
Strand 4
C
358 364parallel
Strand 5
C
560 563parallel
Strand 6
C
638 641anti-parallel
Strand 7
C
592 596anti-parallel
Strand 8
C
797 800parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
569 570first strand
Strand 2
C
808 811anti-parallel
Strand 3
C
599 602parallel
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