Analysis of interatomic Contacts of Structural Units in PDB entry:
8VI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VI0 entry

There are 3 chains in PDB entry 8VI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 249	ILE 1059
B	MET 249	ILE 1059
D	MET 249	ILE 1059

There are 92 helices in PDB entry 8VI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	254	Right-handed alpha
Helix 2	AA2	A	263	291	Right-handed alpha
Helix 3	AA3	A	296	319	Right-handed alpha
Helix 4	AA4	A	320	323	Right-handed 310
Helix 5	AA5	A	330	338	Right-handed alpha
Helix 6	AA6	A	363	376	Right-handed alpha
Helix 7	AA7	A	380	382	Right-handed 310
Helix 8	AA8	A	394	419	Right-handed alpha
Helix 9	AA9	A	424	430	Right-handed alpha
Helix 10	AB1	A	443	469	Right-handed alpha
Helix 11	AB2	A	485	489	Right-handed 310
Helix 12	AB3	A	532	548	Right-handed alpha
Helix 13	AB4	A	566	576	Right-handed alpha
Helix 14	AB5	A	579	582	Right-handed 310
Helix 15	AB6	A	606	612	Right-handed alpha
Helix 16	AB7	A	612	619	Right-handed alpha
Helix 17	AB8	A	634	638	Right-handed alpha
Helix 18	AB9	A	714	721	Right-handed alpha
Helix 19	AC1	A	724	732	Right-handed alpha
Helix 20	AC2	A	747	754	Right-handed alpha
Helix 21	AC3	A	777	789	Right-handed alpha
Helix 22	AC4	A	810	831	Right-handed alpha
Helix 23	AC5	A	845	857	Right-handed alpha
Helix 24	AC6	A	858	860	Right-handed 310
Helix 25	AC7	A	861	879	Right-handed alpha
Helix 26	AC8	A	887	913	Right-handed alpha
Helix 27	AC9	A	915	947	Right-handed alpha
Helix 28	AD1	A	977	999	Right-handed alpha
Helix 29	AD2	A	1008	1023	Right-handed alpha
Helix 30	AD3	A	1023	1032	Right-handed alpha
Helix 31	AD4	A	1038	1059	Right-handed alpha
Helix 32	AD5	B	250	254	Right-handed alpha
Helix 33	AD6	B	263	291	Right-handed alpha
Helix 34	AD7	B	296	319	Right-handed alpha
Helix 35	AD8	B	320	323	Right-handed 310
Helix 36	AD9	B	330	339	Right-handed alpha
Helix 37	AE1	B	363	376	Right-handed alpha
Helix 38	AE2	B	394	419	Right-handed alpha
Helix 39	AE3	B	424	430	Right-handed alpha
Helix 40	AE4	B	443	469	Right-handed alpha
Helix 41	AE5	B	485	489	Right-handed 310
Helix 42	AE6	B	532	548	Right-handed alpha
Helix 43	AE7	B	566	576	Right-handed alpha
Helix 44	AE8	B	579	582	Right-handed 310
Helix 45	AE9	B	606	612	Right-handed alpha
Helix 46	AF1	B	612	618	Right-handed alpha
Helix 47	AF2	B	634	638	Right-handed alpha
Helix 48	AF3	B	714	719	Right-handed alpha
Helix 49	AF4	B	724	732	Right-handed alpha
Helix 50	AF5	B	747	754	Right-handed alpha
Helix 51	AF6	B	777	789	Right-handed alpha
Helix 52	AF7	B	810	831	Right-handed alpha
Helix 53	AF8	B	845	853	Right-handed alpha
Helix 54	AF9	B	855	857	Right-handed 310
Helix 55	AG1	B	858	860	Right-handed 310
Helix 56	AG2	B	861	879	Right-handed alpha
Helix 57	AG3	B	887	913	Right-handed alpha
Helix 58	AG4	B	915	947	Right-handed alpha
Helix 59	AG5	B	977	999	Right-handed alpha
Helix 60	AG6	B	1008	1023	Right-handed alpha
Helix 61	AG7	B	1023	1032	Right-handed alpha
Helix 62	AG8	B	1038	1059	Right-handed alpha
Helix 63	AG9	D	250	254	Right-handed alpha
Helix 64	AH1	D	263	291	Right-handed alpha
Helix 65	AH2	D	296	319	Right-handed alpha
Helix 66	AH3	D	320	323	Right-handed 310
Helix 67	AH4	D	330	339	Right-handed alpha
Helix 68	AH5	D	363	376	Right-handed alpha
Helix 69	AH6	D	380	382	Right-handed 310
Helix 70	AH7	D	394	419	Right-handed alpha
Helix 71	AH8	D	424	430	Right-handed alpha
Helix 72	AH9	D	443	469	Right-handed alpha
Helix 73	AI1	D	485	489	Right-handed 310
Helix 74	AI2	D	532	548	Right-handed alpha
Helix 75	AI3	D	566	576	Right-handed alpha
Helix 76	AI4	D	579	582	Right-handed 310
Helix 77	AI5	D	606	612	Right-handed alpha
Helix 78	AI6	D	612	619	Right-handed alpha
Helix 79	AI7	D	634	638	Right-handed alpha
Helix 80	AI8	D	714	719	Right-handed alpha
Helix 81	AI9	D	724	732	Right-handed alpha
Helix 82	AJ1	D	747	754	Right-handed alpha
Helix 83	AJ2	D	777	789	Right-handed alpha
Helix 84	AJ3	D	810	831	Right-handed alpha
Helix 85	AJ4	D	845	858	Right-handed alpha
Helix 86	AJ5	D	861	879	Right-handed alpha
Helix 87	AJ6	D	887	913	Right-handed alpha
Helix 88	AJ7	D	915	947	Right-handed alpha
Helix 89	AJ8	D	977	999	Right-handed alpha
Helix 90	AJ9	D	1008	1023	Right-handed alpha
Helix 91	AK1	D	1023	1032	Right-handed alpha
Helix 92	AK2	D	1038	1059	Right-handed alpha

There are 9 sheets in PDB entry 8VI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	325	329	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	499	first strand
Strand 2	A	516	521	anti-parallel
Strand 3	A	384	390	parallel
Strand 4	A	350	356	parallel
Strand 5	A	552	557	parallel
Strand 6	A	630	633	anti-parallel
Strand 7	A	584	588	anti-parallel
Strand 8	A	792	795	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	803	806	anti-parallel
Strand 3	A	592	594	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	325	329	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	499	first strand
Strand 2	B	516	521	anti-parallel
Strand 3	B	384	390	parallel
Strand 4	B	350	356	parallel
Strand 5	B	552	555	parallel
Strand 6	B	630	633	anti-parallel
Strand 7	B	584	588	anti-parallel
Strand 8	B	792	795	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	562	first strand
Strand 2	B	803	806	anti-parallel
Strand 3	B	592	594	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	325	329	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	499	first strand
Strand 2	D	516	521	anti-parallel
Strand 3	D	384	390	parallel
Strand 4	D	350	356	parallel
Strand 5	D	552	555	parallel
Strand 6	D	630	633	anti-parallel
Strand 7	D	584	588	anti-parallel
Strand 8	D	792	795	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	562	first strand
Strand 2	D	803	806	anti-parallel
Strand 3	D	592	594	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VI0