Analysis of interatomic Contacts of Structural Units in PDB entry:
8VI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VI3 entry

There are 3 chains in PDB entry 8VI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6LEU 313
B
 PRO 6LEU 313
C
 PRO 6LEU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8VI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 13Right-handed 310
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
36 66Right-handed alpha
Helix 4
AA4
A
66 76Right-handed alpha
Helix 5
AA5
A
78 83Right-handed 310
Helix 6
AA6
A
84 98Right-handed alpha
Helix 7
AA7
A
101 124Right-handed alpha
Helix 8
AA8
A
125 130Right-handed 310
Helix 9
AA9
A
134 138Right-handed 310
Helix 10
AB1
A
139 141Right-handed 310
Helix 11
AB2
A
142 147Right-handed alpha
Helix 12
AB3
A
147 161Right-handed alpha
Helix 13
AB4
A
162 192Right-handed alpha
Helix 14
AB5
A
194 199Right-handed alpha
Helix 15
AB6
A
200 204Right-handed 310
Helix 16
AB7
A
205 219Right-handed alpha
Helix 17
AB8
A
224 249Right-handed alpha
Helix 18
AB9
A
254 257Right-handed 310
Helix 19
AC1
A
258 277Right-handed alpha
Helix 20
AC2
A
280 309Right-handed alpha
Helix 21
AC3
B
10 13Right-handed 310
Helix 22
AC4
B
14 29Right-handed alpha
Helix 23
AC5
B
36 66Right-handed alpha
Helix 24
AC6
B
66 76Right-handed alpha
Helix 25
AC7
B
78 83Right-handed 310
Helix 26
AC8
B
84 98Right-handed alpha
Helix 27
AC9
B
101 124Right-handed alpha
Helix 28
AD1
B
125 130Right-handed 310
Helix 29
AD2
B
134 138Right-handed 310
Helix 30
AD3
B
139 141Right-handed 310
Helix 31
AD4
B
142 147Right-handed alpha
Helix 32
AD5
B
147 161Right-handed alpha
Helix 33
AD6
B
162 192Right-handed alpha
Helix 34
AD7
B
194 199Right-handed alpha
Helix 35
AD8
B
200 204Right-handed 310
Helix 36
AD9
B
205 219Right-handed alpha
Helix 37
AE1
B
224 249Right-handed alpha
Helix 38
AE2
B
254 257Right-handed 310
Helix 39
AE3
B
258 277Right-handed alpha
Helix 40
AE4
B
280 309Right-handed alpha
Helix 41
AE5
C
10 13Right-handed 310
Helix 42
AE6
C
14 29Right-handed alpha
Helix 43
AE7
C
36 66Right-handed alpha
Helix 44
AE8
C
66 76Right-handed alpha
Helix 45
AE9
C
78 83Right-handed 310
Helix 46
AF1
C
84 98Right-handed alpha
Helix 47
AF2
C
101 124Right-handed alpha
Helix 48
AF3
C
125 130Right-handed 310
Helix 49
AF4
C
134 138Right-handed 310
Helix 50
AF5
C
139 141Right-handed 310
Helix 51
AF6
C
142 147Right-handed alpha
Helix 52
AF7
C
147 161Right-handed alpha
Helix 53
AF8
C
162 191Right-handed alpha
Helix 54
AF9
C
194 199Right-handed alpha
Helix 55
AG1
C
200 204Right-handed 310
Helix 56
AG2
C
205 219Right-handed alpha
Helix 57
AG3
C
224 249Right-handed alpha
Helix 58
AG4
C
254 257Right-handed 310
Helix 59
AG5
C
258 277Right-handed alpha
Helix 60
AG6
C
280 309Right-handed alpha
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There are no sheets in PDB entry 8VI3
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il