Analysis of interatomic Contacts of Structural Units in PDB entry:
8VI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VI8 entry

There are 6 chains in PDB entry 8VI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	GLU 224
B	SER -2	GLU 224
C	SER -2	GLU 224
D	SER -2	GLU 224
E	SER -2	GLU 224
F	SER -2	GLU 224

There are 53 helices in PDB entry 8VI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	40	Right-handed alpha
Helix 2	AA2	A	49	59	Right-handed alpha
Helix 3	AA3	A	73	77	Right-handed 310
Helix 4	AA4	A	103	108	Right-handed 310
Helix 5	AA5	A	119	128	Right-handed alpha
Helix 6	AA6	A	138	148	Right-handed alpha
Helix 7	AA7	A	158	167	Right-handed alpha
Helix 8	AA8	A	194	211	Right-handed alpha
Helix 9	AA9	A	212	222	Right-handed alpha
Helix 10	AB1	B	26	40	Right-handed alpha
Helix 11	AB2	B	49	59	Right-handed alpha
Helix 12	AB3	B	74	77	Right-handed 310
Helix 13	AB4	B	103	108	Right-handed 310
Helix 14	AB5	B	119	128	Right-handed alpha
Helix 15	AB6	B	138	148	Right-handed alpha
Helix 16	AB7	B	158	167	Right-handed alpha
Helix 17	AB8	B	194	211	Right-handed alpha
Helix 18	AB9	B	211	222	Right-handed alpha
Helix 19	AC1	C	26	40	Right-handed alpha
Helix 20	AC2	C	49	59	Right-handed alpha
Helix 21	AC3	C	74	78	Right-handed 310
Helix 22	AC4	C	119	128	Right-handed alpha
Helix 23	AC5	C	138	148	Right-handed alpha
Helix 24	AC6	C	158	167	Right-handed alpha
Helix 25	AC7	C	194	211	Right-handed alpha
Helix 26	AC8	C	211	222	Right-handed alpha
Helix 27	AC9	D	26	39	Right-handed alpha
Helix 28	AD1	D	49	60	Right-handed alpha
Helix 29	AD2	D	74	78	Right-handed 310
Helix 30	AD3	D	103	108	Right-handed 310
Helix 31	AD4	D	119	128	Right-handed alpha
Helix 32	AD5	D	138	148	Right-handed alpha
Helix 33	AD6	D	158	167	Right-handed alpha
Helix 34	AD7	D	194	211	Right-handed alpha
Helix 35	AD8	D	211	220	Right-handed alpha
Helix 36	AD9	E	26	40	Right-handed alpha
Helix 37	AE1	E	49	59	Right-handed alpha
Helix 38	AE2	E	74	78	Right-handed 310
Helix 39	AE3	E	103	107	Right-handed 310
Helix 40	AE4	E	119	128	Right-handed alpha
Helix 41	AE5	E	138	148	Right-handed alpha
Helix 42	AE6	E	158	167	Right-handed alpha
Helix 43	AE7	E	194	211	Right-handed alpha
Helix 44	AE8	E	211	222	Right-handed alpha
Helix 45	AE9	F	26	39	Right-handed alpha
Helix 46	AF1	F	49	60	Right-handed alpha
Helix 47	AF2	F	74	78	Right-handed 310
Helix 48	AF3	F	104	108	Right-handed 310
Helix 49	AF4	F	119	128	Right-handed alpha
Helix 50	AF5	F	138	148	Right-handed alpha
Helix 51	AF6	F	158	167	Right-handed alpha
Helix 52	AF7	F	194	211	Right-handed alpha
Helix 53	AF8	F	211	222	Right-handed alpha

There are 20 sheets in PDB entry 8VI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	43	47	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	188	190	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	111	115	parallel
Strand 3	A	153	157	parallel
Strand 4	A	86	94	anti-parallel
Strand 5	A	174	185	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	45	48	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	24	25	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	189	190	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	111	115	parallel
Strand 3	B	153	157	parallel
Strand 4	B	86	94	anti-parallel
Strand 5	B	174	185	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	43	48	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	24	25	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	111	115	parallel
Strand 3	C	153	157	parallel
Strand 4	C	86	94	anti-parallel
Strand 5	C	174	185	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	43	48	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	24	25	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	111	115	parallel
Strand 3	D	153	157	parallel
Strand 4	D	86	94	anti-parallel
Strand 5	D	174	185	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	43	48	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	19	first strand
Strand 2	E	24	25	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	111	115	parallel
Strand 3	E	153	157	parallel
Strand 4	E	86	94	anti-parallel
Strand 5	E	174	185	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	43	48	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	24	25	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	136	first strand
Strand 2	F	111	115	parallel
Strand 3	F	153	157	parallel
Strand 4	F	86	94	anti-parallel
Strand 5	F	174	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VI8