Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VIA entry

There are 4 chains in PDB entry 8VIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	CYS 286	THR 671
C	THR 716	ALA 1070
H	GLU 1	SER 132
L	GLU 1	LYS 109

There are 27 helices in PDB entry 8VIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	290	298	Right-handed alpha
Helix 2	AA2	D	333	337	Right-handed 310
Helix 3	AA3	D	359	365	Right-handed alpha
Helix 4	AA4	D	379	385	Right-handed 310
Helix 5	AA5	D	411	416	Right-handed alpha
Helix 6	AA6	D	497	501	Right-handed 310
Helix 7	AA7	D	628	632	Right-handed 310
Helix 8	AA8	C	737	743	Right-handed alpha
Helix 9	AA9	C	746	757	Right-handed alpha
Helix 10	AB1	C	760	780	Right-handed alpha
Helix 11	AB2	C	801	805	Right-handed 310
Helix 12	AB3	C	816	826	Right-handed alpha
Helix 13	AB4	C	835	840	Right-handed alpha
Helix 14	AB5	C	850	855	Right-handed alpha
Helix 15	AB6	C	866	885	Right-handed alpha
Helix 16	AB7	C	886	890	Right-handed 310
Helix 17	AB8	C	897	902	Right-handed alpha
Helix 18	AB9	C	902	908	Right-handed alpha
Helix 19	AC1	C	913	919	Right-handed alpha
Helix 20	AC2	C	919	939	Right-handed alpha
Helix 21	AC3	C	942	944	Right-handed 310
Helix 22	AC4	C	945	965	Right-handed alpha
Helix 23	AC5	C	977	983	Right-handed alpha
Helix 24	AC6	C	985	1029	Right-handed alpha
Helix 25	AC7	H	29	37	Right-handed 310
Helix 26	AC8	H	95	99	Right-handed 310
Helix 27	AC9	L	80	84	Right-handed 310

There are 17 sheets in PDB entry 8VIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	309	first strand
Strand 2	D	591	595	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	323	first strand
Strand 2	D	534	538	parallel
Strand 3	D	541	549	anti-parallel
Strand 4	D	580	583	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	353	first strand
Strand 2	D	389	397	anti-parallel
Strand 3	D	503	511	anti-parallel
Strand 4	D	426	432	anti-parallel
Strand 5	D	371	372	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	519	520	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	449	first strand
Strand 2	D	487	489	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	469	first strand
Strand 2	D	483	484	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	561	first strand
Strand 2	D	570	571	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	659	660	first strand
Strand 2	D	666	667	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	719	first strand
Strand 2	C	1068	1069	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	86	92	anti-parallel
Strand 4	H	76	81	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	127	131	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	38	44	anti-parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	127	131	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	119	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	112	first strand
Strand 2	H	115	116	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	71	77	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	104	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	104	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIA