Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VIG entry

There is 1 chain in PDB entry 8VIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -5ALA 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8VIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 34Right-handed alpha
Helix 2
AA2
A
37 43Right-handed 310
Helix 3
AA3
A
51 70Right-handed alpha
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
108 130Right-handed alpha
Helix 6
AA6
A
142 164Right-handed alpha
Helix 7
AA7
A
165 166Right-handed 310
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
212 216Right-handed 310
Helix 10
AB1
A
234 244Right-handed alpha
Helix 11
AB2
A
249 253Right-handed 310
Helix 12
AB3
A
254 264Right-handed alpha
Helix 13
AB4
A
300 316Right-handed alpha
Helix 14
AB5
A
323 332Right-handed alpha
Helix 15
AB6
A
337 341Right-handed 310
Helix 16
AB7
A
396 400Right-handed 310
Helix 17
AB8
A
415 420Right-handed 310
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There are 5 sheets in PDB entry 8VIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
226 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
219 223anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
288 290anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
440 441anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
405 408anti-parallel
Strand 3
A
373 379anti-parallel
Strand 4
A
435 436parallel
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