Analysis of interatomic Contacts of Structural Units in PDB entry:
8VII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VII entry

There are 2 chains in PDB entry 8VII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1HIS 448
B
 HIS 0HIS 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8VII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 36Right-handed alpha
Helix 3
AA3
A
40 46Right-handed 310
Helix 4
AA4
A
54 73Right-handed alpha
Helix 5
AA5
A
81 88Right-handed alpha
Helix 6
AA6
A
96 105Right-handed alpha
Helix 7
AA7
A
111 133Right-handed alpha
Helix 8
AA8
A
145 168Right-handed alpha
Helix 9
AA9
A
169 174Right-handed 310
Helix 10
AB1
A
215 219Right-handed 310
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
248 256Right-handed 310
Helix 13
AB4
A
257 267Right-handed alpha
Helix 14
AB5
A
302 314Right-handed alpha
Helix 15
AB6
A
321 331Right-handed alpha
Helix 16
AB7
A
339 346Right-handed 310
Helix 17
AB8
A
394 398Right-handed 310
Helix 18
AB9
A
401 405Right-handed 310
Helix 19
AC1
A
420 425Right-handed 310
Helix 20
AC2
B
16 37Right-handed alpha
Helix 21
AC3
B
40 46Right-handed 310
Helix 22
AC4
B
54 73Right-handed alpha
Helix 23
AC5
B
81 88Right-handed alpha
Helix 24
AC6
B
96 105Right-handed alpha
Helix 25
AC7
B
111 132Right-handed alpha
Helix 26
AC8
B
145 167Right-handed alpha
Helix 27
AC9
B
168 169Right-handed 310
Helix 28
AD1
B
170 174Right-handed 310
Helix 29
AD2
B
215 219Right-handed 310
Helix 30
AD3
B
237 247Right-handed alpha
Helix 31
AD4
B
252 256Right-handed 310
Helix 32
AD5
B
257 267Right-handed alpha
Helix 33
AD6
B
302 314Right-handed alpha
Helix 34
AD7
B
321 331Right-handed alpha
Helix 35
AD8
B
339 346Right-handed 310
Helix 36
AD9
B
401 405Right-handed 310
Helix 37
AE1
B
420 425Right-handed 310
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There are 8 sheets in PDB entry 8VII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
445 446anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
222 226anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
290 292anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
410 413anti-parallel
Strand 3
A
378 384anti-parallel
Strand 4
A
440 441parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
229 232anti-parallel
Strand 3
B
445 446anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 204first strand
Strand 2
B
222 226anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 278first strand
Strand 2
B
281 285anti-parallel
Strand 3
B
290 292anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
410 413anti-parallel
Strand 3
B
378 384anti-parallel
Strand 4
B
440 441parallel
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