Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VIS entry

There are 8 chains in PDB entry 8VIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 172	LYS 186
B	ILE 187	PHE 420
C	ALA 165	LYS 186
D	ILE 187	GLU 422
E	ASN 167	LYS 186
F	ILE 187	PHE 420
G	ALA 166	LYS 186
H	ILE 187	GLU 419

There are 18 helices in PDB entry 8VIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	225	230	Right-handed 310
Helix 2	AA2	B	234	236	Right-handed 310
Helix 3	AA3	B	333	338	Right-handed alpha
Helix 4	AA4	B	408	417	Right-handed alpha
Helix 5	AA5	C	167	171	Right-handed 310
Helix 6	AA6	D	225	230	Right-handed 310
Helix 7	AA7	D	234	236	Right-handed 310
Helix 8	AA8	D	333	338	Right-handed alpha
Helix 9	AA9	D	408	417	Right-handed alpha
Helix 10	AB1	F	225	230	Right-handed 310
Helix 11	AB2	F	234	236	Right-handed 310
Helix 12	AB3	F	333	338	Right-handed alpha
Helix 13	AB4	F	408	417	Right-handed alpha
Helix 14	AB5	G	167	171	Right-handed 310
Helix 15	AB6	H	225	230	Right-handed 310
Helix 16	AB7	H	234	236	Right-handed 310
Helix 17	AB8	H	333	338	Right-handed alpha
Helix 18	AB9	H	408	417	Right-handed alpha

There are 8 sheets in PDB entry 8VIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	325	332	anti-parallel
Strand 3	B	351	355	anti-parallel
Strand 4	B	400	404	anti-parallel
Strand 5	B	381	389	anti-parallel
Strand 6	B	371	375	anti-parallel
Strand 7	B	305	310	anti-parallel
Strand 8	B	325	332	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	206	first strand
Strand 2	B	209	216	anti-parallel
Strand 3	B	221	224	anti-parallel
Strand 4	B	274	278	anti-parallel
Strand 5	B	251	260	anti-parallel
Strand 6	B	238	242	anti-parallel
Strand 7	B	201	206	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	325	332	anti-parallel
Strand 3	D	351	355	anti-parallel
Strand 4	D	400	404	anti-parallel
Strand 5	D	381	389	anti-parallel
Strand 6	D	371	375	anti-parallel
Strand 7	D	305	310	anti-parallel
Strand 8	D	325	332	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	206	first strand
Strand 2	D	209	218	anti-parallel
Strand 3	D	221	224	anti-parallel
Strand 4	D	274	278	anti-parallel
Strand 5	D	251	260	anti-parallel
Strand 6	D	238	242	anti-parallel
Strand 7	D	201	206	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	192	first strand
Strand 2	F	325	332	anti-parallel
Strand 3	F	351	355	anti-parallel
Strand 4	F	400	404	anti-parallel
Strand 5	F	381	389	anti-parallel
Strand 6	F	371	375	anti-parallel
Strand 7	F	305	310	anti-parallel
Strand 8	F	325	332	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	206	first strand
Strand 2	F	209	216	anti-parallel
Strand 3	F	221	224	anti-parallel
Strand 4	F	274	278	anti-parallel
Strand 5	F	251	260	anti-parallel
Strand 6	F	238	242	anti-parallel
Strand 7	F	201	206	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	192	first strand
Strand 2	H	325	332	anti-parallel
Strand 3	H	351	355	anti-parallel
Strand 4	H	400	404	anti-parallel
Strand 5	H	381	389	anti-parallel
Strand 6	H	371	375	anti-parallel
Strand 7	H	305	310	anti-parallel
Strand 8	H	325	332	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	206	first strand
Strand 2	H	209	218	anti-parallel
Strand 3	H	221	224	anti-parallel
Strand 4	H	274	278	anti-parallel
Strand 5	H	251	260	anti-parallel
Strand 6	H	238	242	anti-parallel
Strand 7	H	201	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIS