Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VIW entry

There are 4 chains in PDB entry 8VIW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 101	LEU 651
B	THR 101	LEU 651
C	THR 101	LEU 651
D	THR 101	LEU 651

There are112 helices in PDB entry 8VIW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	114	Right-handed alpha
Helix 2	AA2	A	141	151	Right-handed alpha
Helix 3	AA3	A	169	181	Right-handed alpha
Helix 4	AA4	A	194	206	Right-handed alpha
Helix 5	AA5	A	223	235	Right-handed alpha
Helix 6	AA6	A	275	277	Right-handed 310
Helix 7	AA7	A	289	302	Right-handed alpha
Helix 8	AA8	A	303	305	Right-handed 310
Helix 9	AA9	A	324	327	Right-handed 310
Helix 10	AB1	A	342	359	Right-handed alpha
Helix 11	AB2	A	360	367	Right-handed 310
Helix 12	AB3	A	380	384	Right-handed 310
Helix 13	AB4	A	400	402	Right-handed 310
Helix 14	AB5	A	403	415	Right-handed alpha
Helix 15	AB6	A	432	437	Right-handed alpha
Helix 16	AB7	A	438	440	Right-handed 310
Helix 17	AB8	A	454	459	Right-handed 310
Helix 18	AB9	A	460	468	Right-handed alpha
Helix 19	AC1	A	487	499	Right-handed alpha
Helix 20	AC2	A	544	546	Right-handed 310
Helix 21	AC3	A	552	554	Right-handed 310
Helix 22	AC4	A	558	562	Right-handed 310
Helix 23	AC5	A	567	579	Right-handed alpha
Helix 24	AC6	A	602	608	Right-handed alpha
Helix 25	AC7	A	611	621	Right-handed alpha
Helix 26	AC8	A	624	628	Right-handed 310
Helix 27	AC9	A	629	634	Right-handed alpha
Helix 28	AD1	A	636	643	Right-handed 310
Helix 29	AD2	B	103	114	Right-handed alpha
Helix 30	AD3	B	141	151	Right-handed alpha
Helix 31	AD4	B	169	181	Right-handed alpha
Helix 32	AD5	B	194	206	Right-handed alpha
Helix 33	AD6	B	223	235	Right-handed alpha
Helix 34	AD7	B	275	277	Right-handed 310
Helix 35	AD8	B	289	302	Right-handed alpha
Helix 36	AD9	B	303	305	Right-handed 310
Helix 37	AE1	B	324	327	Right-handed 310
Helix 38	AE2	B	342	359	Right-handed alpha
Helix 39	AE3	B	360	367	Right-handed 310
Helix 40	AE4	B	380	384	Right-handed 310
Helix 41	AE5	B	400	402	Right-handed 310
Helix 42	AE6	B	403	415	Right-handed alpha
Helix 43	AE7	B	432	437	Right-handed alpha
Helix 44	AE8	B	438	440	Right-handed 310
Helix 45	AE9	B	454	459	Right-handed 310
Helix 46	AF1	B	460	468	Right-handed alpha
Helix 47	AF2	B	487	499	Right-handed alpha
Helix 48	AF3	B	544	546	Right-handed 310
Helix 49	AF4	B	552	554	Right-handed 310
Helix 50	AF5	B	558	562	Right-handed 310
Helix 51	AF6	B	567	579	Right-handed alpha
Helix 52	AF7	B	602	608	Right-handed alpha
Helix 53	AF8	B	611	621	Right-handed alpha
Helix 54	AF9	B	624	628	Right-handed 310
Helix 55	AG1	B	629	634	Right-handed alpha
Helix 56	AG2	B	636	643	Right-handed 310
Helix 57	AG3	C	103	114	Right-handed alpha
Helix 58	AG4	C	141	151	Right-handed alpha
Helix 59	AG5	C	169	181	Right-handed alpha
Helix 60	AG6	C	194	206	Right-handed alpha
Helix 61	AG7	C	223	235	Right-handed alpha
Helix 62	AG8	C	275	277	Right-handed 310
Helix 63	AG9	C	289	302	Right-handed alpha
Helix 64	AH1	C	303	305	Right-handed 310
Helix 65	AH2	C	324	327	Right-handed 310
Helix 66	AH3	C	342	359	Right-handed alpha
Helix 67	AH4	C	360	367	Right-handed 310
Helix 68	AH5	C	380	384	Right-handed 310
Helix 69	AH6	C	400	402	Right-handed 310
Helix 70	AH7	C	403	415	Right-handed alpha
Helix 71	AH8	C	432	437	Right-handed alpha
Helix 72	AH9	C	438	440	Right-handed 310
Helix 73	AI1	C	454	459	Right-handed 310
Helix 74	AI2	C	460	468	Right-handed alpha
Helix 75	AI3	C	487	499	Right-handed alpha
Helix 76	AI4	C	544	546	Right-handed 310
Helix 77	AI5	C	552	554	Right-handed 310
Helix 78	AI6	C	558	562	Right-handed 310
Helix 79	AI7	C	567	579	Right-handed alpha
Helix 80	AI8	C	602	608	Right-handed alpha
Helix 81	AI9	C	611	621	Right-handed alpha
Helix 82	AJ1	C	624	628	Right-handed 310
Helix 83	AJ2	C	629	634	Right-handed alpha
Helix 84	AJ3	C	636	643	Right-handed 310
Helix 85	AJ4	D	103	114	Right-handed alpha
Helix 86	AJ5	D	141	151	Right-handed alpha
Helix 87	AJ6	D	169	181	Right-handed alpha
Helix 88	AJ7	D	194	206	Right-handed alpha
Helix 89	AJ8	D	223	235	Right-handed alpha
Helix 90	AJ9	D	275	277	Right-handed 310
Helix 91	AK1	D	289	302	Right-handed alpha
Helix 92	AK2	D	303	305	Right-handed 310
Helix 93	AK3	D	324	327	Right-handed 310
Helix 94	AK4	D	342	359	Right-handed alpha
Helix 95	AK5	D	360	367	Right-handed 310
Helix 96	AK6	D	380	384	Right-handed 310
Helix 97	AK7	D	400	402	Right-handed 310
Helix 98	AK8	D	403	415	Right-handed alpha
Helix 99	AK9	D	432	437	Right-handed alpha
Helix 100	AL1	D	438	440	Right-handed 310
Helix 101	AL2	D	454	459	Right-handed 310
Helix 102	AL3	D	460	468	Right-handed alpha
Helix 103	AL4	D	487	499	Right-handed alpha
Helix 104	AL5	D	544	546	Right-handed 310
Helix 105	AL6	D	552	554	Right-handed 310
Helix 106	AL7	D	558	562	Right-handed 310
Helix 107	AL8	D	567	579	Right-handed alpha
Helix 108	AL9	D	602	608	Right-handed alpha
Helix 109	AM1	D	611	621	Right-handed alpha
Helix 110	AM2	D	624	628	Right-handed 310
Helix 111	AM3	D	629	634	Right-handed alpha
Helix 112	AM4	D	636	643	Right-handed 310

There are 20 sheets in PDB entry 8VIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	157	164	parallel
Strand 3	A	129	135	parallel
Strand 4	A	210	215	parallel
Strand 5	A	271	273	anti-parallel
Strand 6	A	240	248	anti-parallel
Strand 7	A	264	265	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	307	318	anti-parallel
Strand 3	A	240	248	parallel
Strand 4	A	255	258	anti-parallel
Strand 5	A	336	339	parallel
Strand 6	A	329	331	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	445	first strand
Strand 2	A	420	425	parallel
Strand 3	A	393	399	parallel
Strand 4	A	474	479	parallel
Strand 5	A	548	550	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	506	first strand
Strand 2	A	582	585	parallel
Strand 3	A	537	538	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	509	511	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	157	164	parallel
Strand 3	B	129	135	parallel
Strand 4	B	210	215	parallel
Strand 5	B	271	273	anti-parallel
Strand 6	B	240	248	anti-parallel
Strand 7	B	264	265	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	307	318	anti-parallel
Strand 3	B	240	248	parallel
Strand 4	B	255	258	anti-parallel
Strand 5	B	336	339	parallel
Strand 6	B	329	331	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	445	first strand
Strand 2	B	420	425	parallel
Strand 3	B	393	399	parallel
Strand 4	B	474	479	parallel
Strand 5	B	548	550	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	506	first strand
Strand 2	B	582	585	parallel
Strand 3	B	537	538	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	527	first strand
Strand 2	B	509	511	anti-parallel
Strand 3	B	541	542	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	157	164	parallel
Strand 3	C	129	135	parallel
Strand 4	C	210	215	parallel
Strand 5	C	271	273	anti-parallel
Strand 6	C	240	248	anti-parallel
Strand 7	C	264	265	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	307	318	anti-parallel
Strand 3	C	240	248	parallel
Strand 4	C	255	258	anti-parallel
Strand 5	C	336	339	parallel
Strand 6	C	329	331	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	445	first strand
Strand 2	C	420	425	parallel
Strand 3	C	393	399	parallel
Strand 4	C	474	479	parallel
Strand 5	C	548	550	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	506	first strand
Strand 2	C	582	585	parallel
Strand 3	C	537	538	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	527	first strand
Strand 2	C	509	511	anti-parallel
Strand 3	C	541	542	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	157	164	parallel
Strand 3	D	129	135	parallel
Strand 4	D	210	215	parallel
Strand 5	D	271	273	anti-parallel
Strand 6	D	240	248	anti-parallel
Strand 7	D	264	265	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	307	318	anti-parallel
Strand 3	D	240	248	parallel
Strand 4	D	255	258	anti-parallel
Strand 5	D	336	339	parallel
Strand 6	D	329	331	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	445	first strand
Strand 2	D	420	425	parallel
Strand 3	D	393	399	parallel
Strand 4	D	474	479	parallel
Strand 5	D	548	550	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	506	first strand
Strand 2	D	582	585	parallel
Strand 3	D	537	538	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	527	first strand
Strand 2	D	509	511	anti-parallel
Strand 3	D	541	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VIW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIW