Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VIY entry

There is 1 chain in PDB entry 8VIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8VIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 129Right-handed 310
Helix 2
AA2
A
131 149Right-handed alpha
Helix 3
AA3
A
166 170Right-handed 310
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
177 197Right-handed alpha
Helix 6
AA6
A
210 214Right-handed 310
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
222 232Right-handed alpha
Helix 9
AA9
A
234 245Right-handed alpha
Helix 10
AB1
A
264 273Right-handed alpha
Helix 11
AB2
A
277 285Right-handed alpha
Helix 12
AB3
A
293 296Right-handed 310
Helix 13
AB4
A
349 371Right-handed alpha
Helix 14
AB5
A
373 378Right-handed alpha
Helix 15
AB6
A
378 392Right-handed alpha
Helix 16
AB7
A
396 403Right-handed alpha
Helix 17
AB8
A
404 407Right-handed 310
Helix 18
AB9
A
408 420Right-handed alpha
Helix 19
AC1
A
425 431Right-handed alpha
Helix 20
AC2
A
433 446Right-handed alpha
Helix 21
AC3
A
450 455Right-handed alpha
Helix 22
AC4
A
455 463Right-handed alpha
Helix 23
AC5
A
471 496Right-handed alpha
Helix 24
AC6
A
498 504Right-handed alpha
Helix 25
AC7
A
505 519Right-handed alpha
Helix 26
AC8
A
523 527Right-handed 310
Helix 27
AC9
A
534 550Right-handed alpha
Helix 28
AD1
A
550 558Right-handed alpha
Helix 29
AD2
A
559 565Right-handed alpha
Helix 30
AD3
A
566 570Right-handed 310
Helix 31
AD4
A
586 594Right-handed alpha
Helix 32
AD5
A
596 612Right-handed alpha
Helix 33
AD6
A
630 657Right-handed alpha
Helix 34
AD7
A
666 670Right-handed 310
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There are 7 sheets in PDB entry 8VIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
102 110anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
36 37anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
114 119anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
80 81anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
161 162anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
287 291anti-parallel
Strand 3
A
314 319anti-parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
343 344anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
306 307anti-parallel
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