Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VIZ entry

There are 13 chains in PDB entry 8VIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	GLU 72
A	GLY 74	PHE 375
B	GLU 4	GLU 72
B	GLY 74	PHE 375
C	GLU 4	GLU 72
C	GLY 74	PHE 375
D	ASP 1	GLU 72
D	GLY 74	PHE 375
E	GLU 4	GLU 72
E	GLY 74	PHE 375
F	GLU 4	GLU 72
F	GLY 74	PHE 375
G	HIS 24	VAL 743

There are140 helices in PDB entry 8VIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	123	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	202	216	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	257	Right-handed alpha
Helix 11	AB2	A	258	262	Right-handed 310
Helix 12	AB3	A	263	267	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	289	295	Right-handed alpha
Helix 15	AB6	A	301	306	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	334	336	Right-handed 310
Helix 18	AB9	A	337	347	Right-handed alpha
Helix 19	AC1	A	351	355	Right-handed 310
Helix 20	AC2	A	359	364	Right-handed alpha
Helix 21	AC3	A	368	374	Right-handed alpha
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	78	92	Right-handed alpha
Helix 24	AC6	B	112	125	Right-handed alpha
Helix 25	AC7	B	137	146	Right-handed alpha
Helix 26	AC8	B	172	175	Right-handed 310
Helix 27	AC9	B	181	193	Right-handed alpha
Helix 28	AD1	B	194	197	Right-handed 310
Helix 29	AD2	B	204	217	Right-handed alpha
Helix 30	AD3	B	222	232	Right-handed alpha
Helix 31	AD4	B	252	257	Right-handed alpha
Helix 32	AD5	B	258	262	Right-handed 310
Helix 33	AD6	B	273	284	Right-handed alpha
Helix 34	AD7	B	289	295	Right-handed alpha
Helix 35	AD8	B	301	306	Right-handed 310
Helix 36	AD9	B	308	321	Right-handed alpha
Helix 37	AE1	B	337	348	Right-handed alpha
Helix 38	AE2	B	349	353	Right-handed 310
Helix 39	AE3	B	359	366	Right-handed alpha
Helix 40	AE4	B	368	374	Right-handed alpha
Helix 41	AE5	C	55	61	Right-handed alpha
Helix 42	AE6	C	78	92	Right-handed alpha
Helix 43	AE7	C	97	101	Right-handed 310
Helix 44	AE8	C	112	126	Right-handed alpha
Helix 45	AE9	C	137	146	Right-handed alpha
Helix 46	AF1	C	172	175	Right-handed 310
Helix 47	AF2	C	181	193	Right-handed alpha
Helix 48	AF3	C	194	196	Right-handed 310
Helix 49	AF4	C	202	217	Right-handed alpha
Helix 50	AF5	C	222	233	Right-handed alpha
Helix 51	AF6	C	252	257	Right-handed alpha
Helix 52	AF7	C	258	262	Right-handed 310
Helix 53	AF8	C	263	268	Right-handed 310
Helix 54	AF9	C	273	284	Right-handed alpha
Helix 55	AG1	C	289	295	Right-handed alpha
Helix 56	AG2	C	303	305	Right-handed 310
Helix 57	AG3	C	308	321	Right-handed alpha
Helix 58	AG4	C	334	336	Right-handed 310
Helix 59	AG5	C	337	348	Right-handed alpha
Helix 60	AG6	C	359	366	Right-handed alpha
Helix 61	AG7	C	368	374	Right-handed alpha
Helix 62	AG8	D	55	61	Right-handed alpha
Helix 63	AG9	D	78	92	Right-handed alpha
Helix 64	AH1	D	97	101	Right-handed 310
Helix 65	AH2	D	112	126	Right-handed alpha
Helix 66	AH3	D	137	146	Right-handed alpha
Helix 67	AH4	D	172	175	Right-handed 310
Helix 68	AH5	D	181	193	Right-handed alpha
Helix 69	AH6	D	194	196	Right-handed 310
Helix 70	AH7	D	202	217	Right-handed alpha
Helix 71	AH8	D	222	233	Right-handed alpha
Helix 72	AH9	D	252	257	Right-handed alpha
Helix 73	AI1	D	258	263	Right-handed alpha
Helix 74	AI2	D	264	268	Right-handed 310
Helix 75	AI3	D	273	285	Right-handed alpha
Helix 76	AI4	D	286	288	Right-handed 310
Helix 77	AI5	D	289	295	Right-handed alpha
Helix 78	AI6	D	301	306	Right-handed 310
Helix 79	AI7	D	308	321	Right-handed alpha
Helix 80	AI8	D	337	348	Right-handed alpha
Helix 81	AI9	D	351	355	Right-handed 310
Helix 82	AJ1	D	359	366	Right-handed alpha
Helix 83	AJ2	D	369	374	Right-handed alpha
Helix 84	AJ3	E	55	61	Right-handed alpha
Helix 85	AJ4	E	78	92	Right-handed alpha
Helix 86	AJ5	E	113	124	Right-handed alpha
Helix 87	AJ6	E	137	145	Right-handed alpha
Helix 88	AJ7	E	181	193	Right-handed alpha
Helix 89	AJ8	E	202	216	Right-handed alpha
Helix 90	AJ9	E	222	233	Right-handed alpha
Helix 91	AK1	E	252	257	Right-handed alpha
Helix 92	AK2	E	258	263	Right-handed alpha
Helix 93	AK3	E	264	268	Right-handed 310
Helix 94	AK4	E	273	284	Right-handed alpha
Helix 95	AK5	E	286	288	Right-handed 310
Helix 96	AK6	E	289	296	Right-handed alpha
Helix 97	AK7	E	301	306	Right-handed 310
Helix 98	AK8	E	308	321	Right-handed alpha
Helix 99	AK9	E	337	348	Right-handed alpha
Helix 100	AL1	E	359	366	Right-handed alpha
Helix 101	AL2	E	369	374	Right-handed alpha
Helix 102	AL3	F	55	61	Right-handed alpha
Helix 103	AL4	F	78	92	Right-handed alpha
Helix 104	AL5	F	112	126	Right-handed alpha
Helix 105	AL6	F	137	145	Right-handed alpha
Helix 106	AL7	F	181	193	Right-handed alpha
Helix 107	AL8	F	205	216	Right-handed alpha
Helix 108	AL9	F	222	233	Right-handed alpha
Helix 109	AM1	F	252	257	Right-handed alpha
Helix 110	AM2	F	258	261	Right-handed 310
Helix 111	AM3	F	263	268	Right-handed 310
Helix 112	AM4	F	273	284	Right-handed alpha
Helix 113	AM5	F	286	288	Right-handed 310
Helix 114	AM6	F	289	296	Right-handed alpha
Helix 115	AM7	F	301	305	Right-handed 310
Helix 116	AM8	F	308	321	Right-handed alpha
Helix 117	AM9	F	337	348	Right-handed alpha
Helix 118	AN1	F	359	364	Right-handed alpha
Helix 119	AN2	F	368	374	Right-handed alpha
Helix 120	AN3	G	31	35	Right-handed 310
Helix 121	AN4	G	55	59	Right-handed 310
Helix 122	AN5	G	94	112	Right-handed alpha
Helix 123	AN6	G	127	134	Right-handed alpha
Helix 124	AN7	G	179	183	Right-handed 310
Helix 125	AN8	G	206	223	Right-handed alpha
Helix 126	AN9	G	240	248	Right-handed alpha
Helix 127	AO1	G	261	269	Right-handed alpha
Helix 128	AO2	G	295	299	Right-handed 310
Helix 129	AO3	G	324	342	Right-handed alpha
Helix 130	AO4	G	362	366	Right-handed 310
Helix 131	AO5	G	396	400	Right-handed 310
Helix 132	AO6	G	472	489	Right-handed alpha
Helix 133	AO7	G	505	510	Right-handed alpha
Helix 134	AO8	G	511	513	Right-handed 310
Helix 135	AO9	G	557	561	Right-handed 310
Helix 136	AP1	G	584	599	Right-handed alpha
Helix 137	AP2	G	611	619	Right-handed alpha
Helix 138	AP3	G	627	632	Right-handed alpha
Helix 139	AP4	G	689	706	Right-handed alpha
Helix 140	AP5	G	726	731	Right-handed alpha

There are 43 sheets in PDB entry 8VIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	169	170	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	D	41	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	301	parallel
Strand 5	C	329	330	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	169	170	anti-parallel
Strand 4	E	41	42	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	17	21	anti-parallel
Strand 3	F	8	11	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	53	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	67	75	anti-parallel
Strand 4	G	81	89	anti-parallel
Strand 5	G	116	122	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	63	first strand
Strand 2	G	139	141	parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	175	first strand
Strand 2	G	161	166	anti-parallel
Strand 3	G	188	192	anti-parallel
Strand 4	G	196	201	anti-parallel
Strand 5	G	230	234	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	285	289	first strand
Strand 2	G	273	276	anti-parallel
Strand 3	G	304	309	anti-parallel
Strand 4	G	314	319	anti-parallel
Strand 5	G	349	353	parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	429	432	first strand
Strand 2	G	419	426	anti-parallel
Strand 3	G	446	452	anti-parallel
Strand 4	G	461	467	anti-parallel
Strand 5	G	495	500	parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	440	442	first strand
Strand 2	G	517	520	parallel
Strand 3	G	549	554	parallel
Strand 4	G	537	543	anti-parallel
Strand 5	G	566	570	anti-parallel
Strand 6	G	575	579	anti-parallel
Strand 7	G	605	606	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	653	656	first strand
Strand 2	G	641	646	anti-parallel
Strand 3	G	671	675	anti-parallel
Strand 4	G	680	683	anti-parallel
Strand 5	G	717	720	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VIZ