Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJA entry

There is 1 chain in PDB entry 8VJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8VJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 89Right-handed alpha
Helix 2
AA2
A
152 156Right-handed 310
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There are 5 sheets in PDB entry 8VJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
213 221anti-parallel
Strand 4
A
229 240anti-parallel
Strand 5
A
254 261anti-parallel
Strand 6
A
61 77anti-parallel
Strand 7
A
40 52anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
213 221anti-parallel
Strand 4
A
229 240anti-parallel
Strand 5
A
271 274anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
202 207anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 108first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
132 141anti-parallel
Strand 4
A
160 161anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
168 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il