Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJM entry

There are 4 chains in PDB entry 8VJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 288
B
 PHE 11LYS 126
C
 MET 1TYR 288
D
 PHE 11LYS 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8VJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 10Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
29 54Right-handed alpha
Helix 4
AA4
A
79 88Right-handed alpha
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
113 129Right-handed alpha
Helix 7
AA7
A
138 147Right-handed alpha
Helix 8
AA8
A
151 178Right-handed alpha
Helix 9
AA9
A
181 201Right-handed alpha
Helix 10
AB1
A
201 215Right-handed alpha
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
263 273Right-handed alpha
Helix 13
AB4
A
281 286Right-handed 310
Helix 14
AB5
B
33 47Right-handed alpha
Helix 15
AB6
B
48 59Right-handed alpha
Helix 16
AB7
B
60 70Right-handed alpha
Helix 17
AB8
B
77 94Right-handed alpha
Helix 18
AB9
B
102 126Right-handed alpha
Helix 19
AC1
C
2 9Right-handed alpha
Helix 20
AC2
C
14 27Right-handed alpha
Helix 21
AC3
C
30 54Right-handed alpha
Helix 22
AC4
C
79 88Right-handed alpha
Helix 23
AC5
C
89 92Right-handed 310
Helix 24
AC6
C
93 105Right-handed alpha
Helix 25
AC7
C
111 129Right-handed alpha
Helix 26
AC8
C
137 150Right-handed alpha
Helix 27
AC9
C
151 177Right-handed alpha
Helix 28
AD1
C
181 201Right-handed alpha
Helix 29
AD2
C
203 215Right-handed alpha
Helix 30
AD3
C
234 241Right-handed alpha
Helix 31
AD4
C
263 273Right-handed alpha
Helix 32
AD5
C
280 286Right-handed alpha
Helix 33
AD6
D
35 48Right-handed alpha
Helix 34
AD7
D
49 59Right-handed alpha
Helix 35
AD8
D
60 70Right-handed alpha
Helix 36
AD9
D
76 94Right-handed alpha
Helix 37
AE1
D
102 126Right-handed alpha
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There are 4 sheets in PDB entry 8VJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
61 63parallel
Strand 3
A
67 70anti-parallel
Strand 4
B
20 23parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
250 254parallel
Strand 3
A
257 262anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 64first strand
Strand 2
C
67 72anti-parallel
Strand 3
D
20 22parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 230first strand
Strand 2
C
250 253parallel
Strand 3
C
261 262anti-parallel
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