Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJO entry

There are 6 chains in PDB entry 8VJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 278
F
 GLY 99GLY 107
B
 PRO 2GLU 279
G
 GLY 99GLY 107
C
 HIS 7GLU 279
H
 GLY 99GLY 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8VJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 32Right-handed alpha
Helix 2
AA2
A
33 38Right-handed alpha
Helix 3
AA3
A
95 104Right-handed alpha
Helix 4
AA4
A
111 132Right-handed alpha
Helix 5
AA5
A
159 175Right-handed alpha
Helix 6
AA6
A
186 193Right-handed alpha
Helix 7
AA7
A
195 199Right-handed 310
Helix 8
AA8
A
203 212Right-handed alpha
Helix 9
AA9
A
271 273Right-handed 310
Helix 10
AB1
B
2 6Right-handed 310
Helix 11
AB2
B
13 32Right-handed alpha
Helix 12
AB3
B
33 37Right-handed 310
Helix 13
AB4
B
95 105Right-handed alpha
Helix 14
AB5
B
111 131Right-handed alpha
Helix 15
AB6
B
159 175Right-handed alpha
Helix 16
AB7
B
186 193Right-handed alpha
Helix 17
AB8
B
203 212Right-handed alpha
Helix 18
AB9
B
271 273Right-handed 310
Helix 19
AC1
C
13 32Right-handed alpha
Helix 20
AC2
C
33 37Right-handed 310
Helix 21
AC3
C
95 105Right-handed alpha
Helix 22
AC4
C
111 131Right-handed alpha
Helix 23
AC5
C
160 175Right-handed alpha
Helix 24
AC6
C
186 193Right-handed alpha
Helix 25
AC7
C
203 212Right-handed alpha
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There are 9 sheets in PDB entry 8VJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
237 249parallel
Strand 3
A
257 269anti-parallel
Strand 4
A
87 94anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
81 84anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
181 185parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
275 277anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
237 249parallel
Strand 3
B
257 269anti-parallel
Strand 4
B
87 94anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
81 84anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
275 278parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
181 185anti-parallel
Strand 5
B
216 218parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
237 249parallel
Strand 3
C
257 269anti-parallel
Strand 4
C
87 94anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
82 84anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 150first strand
Strand 2
C
275 278parallel
Strand 3
C
227 231anti-parallel
Strand 4
C
181 185anti-parallel
Strand 5
C
216 218parallel
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