Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VJQ entry

There are 2 chains in PDB entry 8VJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	ILE 598
B	GLN 9	ILE 598

There are 47 helices in PDB entry 8VJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	38	43	Right-handed alpha
Helix 3	AA3	A	73	87	Right-handed alpha
Helix 4	AA4	A	88	94	Right-handed alpha
Helix 5	AA5	A	112	119	Right-handed alpha
Helix 6	AA6	A	128	133	Right-handed 310
Helix 7	AA7	A	154	170	Right-handed alpha
Helix 8	AA8	A	180	196	Right-handed alpha
Helix 9	AA9	A	197	202	Right-handed alpha
Helix 10	AB1	A	209	216	Right-handed alpha
Helix 11	AB2	A	240	245	Right-handed alpha
Helix 12	AB3	A	265	271	Right-handed alpha
Helix 13	AB4	A	296	305	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	338	351	Right-handed alpha
Helix 16	AB7	A	364	369	Right-handed alpha
Helix 17	AB8	A	377	402	Right-handed alpha
Helix 18	AB9	A	408	422	Right-handed alpha
Helix 19	AC1	A	423	426	Right-handed 310
Helix 20	AC2	A	433	440	Right-handed alpha
Helix 21	AC3	A	440	459	Right-handed alpha
Helix 22	AC4	A	485	502	Right-handed alpha
Helix 23	AC5	A	532	550	Right-handed alpha
Helix 24	AC6	A	554	578	Right-handed alpha
Helix 25	AC7	B	10	29	Right-handed alpha
Helix 26	AC8	B	38	43	Right-handed alpha
Helix 27	AC9	B	74	87	Right-handed alpha
Helix 28	AD1	B	88	94	Right-handed alpha
Helix 29	AD2	B	112	118	Right-handed alpha
Helix 30	AD3	B	154	170	Right-handed alpha
Helix 31	AD4	B	174	178	Right-handed 310
Helix 32	AD5	B	183	197	Right-handed alpha
Helix 33	AD6	B	197	202	Right-handed alpha
Helix 34	AD7	B	209	216	Right-handed alpha
Helix 35	AD8	B	240	245	Right-handed alpha
Helix 36	AD9	B	264	268	Right-handed 310
Helix 37	AE1	B	296	305	Right-handed alpha
Helix 38	AE2	B	324	332	Right-handed alpha
Helix 39	AE3	B	338	352	Right-handed alpha
Helix 40	AE4	B	377	402	Right-handed alpha
Helix 41	AE5	B	408	426	Right-handed alpha
Helix 42	AE6	B	430	432	Right-handed 310
Helix 43	AE7	B	433	440	Right-handed alpha
Helix 44	AE8	B	440	458	Right-handed alpha
Helix 45	AE9	B	485	502	Right-handed alpha
Helix 46	AF1	B	532	550	Right-handed alpha
Helix 47	AF2	B	554	580	Right-handed alpha

There are 13 sheets in PDB entry 8VJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	B	370	371	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	258	259	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	275	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	B	278	287	anti-parallel
Strand 4	B	272	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	275	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	B	278	287	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	315	320	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	B	125	126	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	530	531	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	521	523	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	595	598	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	258	259	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	508	first strand
Strand 2	B	530	531	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	514	first strand
Strand 2	B	521	523	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	589	first strand
Strand 2	B	595	598	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJQ