Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VJR entry

There are 3 chains in PDB entry 8VJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 2	LEU 527
B	VAL 20	LEU 527
A	VAL 20	LEU 527

There are 24 helices in PDB entry 8VJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	41	47	Right-handed 310
Helix 2	AA2	C	79	85	Right-handed alpha
Helix 3	AA3	C	125	130	Right-handed alpha
Helix 4	AA4	C	219	223	Right-handed 310
Helix 5	AA5	C	318	323	Right-handed 310
Helix 6	AA6	C	389	395	Right-handed alpha
Helix 7	AA7	C	447	458	Right-handed alpha
Helix 8	AA8	B	41	45	Right-handed 310
Helix 9	AA9	B	74	77	Right-handed 310
Helix 10	AB1	B	78	85	Right-handed alpha
Helix 11	AB2	B	125	130	Right-handed alpha
Helix 12	AB3	B	219	223	Right-handed 310
Helix 13	AB4	B	447	450	Right-handed 310
Helix 14	AB5	B	451	458	Right-handed alpha
Helix 15	AB6	A	41	46	Right-handed 310
Helix 16	AB7	A	74	77	Right-handed 310
Helix 17	AB8	A	78	86	Right-handed alpha
Helix 18	AB9	A	125	130	Right-handed alpha
Helix 19	AC1	A	155	159	Right-handed 310
Helix 20	AC2	A	266	270	Right-handed 310
Helix 21	AC3	A	351	358	Right-handed alpha
Helix 22	AC4	A	369	373	Right-handed 310
Helix 23	AC5	A	389	394	Right-handed alpha
Helix 24	AC6	A	447	458	Right-handed alpha

There are 26 sheets in PDB entry 8VJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	142	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	49	58	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	166	176	anti-parallel
Strand 3	C	108	116	anti-parallel
Strand 4	C	134	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	499	501	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	377	385	anti-parallel
Strand 3	C	325	331	anti-parallel
Strand 4	C	341	348	anti-parallel
Strand 5	C	363	365	anti-parallel
Strand 6	C	289	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	424	first strand
Strand 2	C	440	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	476	483	anti-parallel
Strand 3	C	464	471	anti-parallel
Strand 4	C	506	513	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	494	first strand
Strand 2	C	523	525	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	58	first strand
Strand 2	B	184	192	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	144	149	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	166	177	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	134	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	197	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	419	424	anti-parallel
Strand 3	B	235	238	anti-parallel
Strand 4	B	499	500	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	367	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	272	280	anti-parallel
Strand 4	B	376	385	anti-parallel
Strand 5	B	325	334	anti-parallel
Strand 6	B	337	345	anti-parallel
Strand 7	A	426	427	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	478	483	anti-parallel
Strand 4	B	464	469	anti-parallel
Strand 5	B	508	513	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	523	524	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	428	first strand
Strand 2	A	337	345	parallel
Strand 3	A	327	334	anti-parallel
Strand 4	A	377	383	anti-parallel
Strand 5	A	272	275	anti-parallel
Strand 6	A	290	292	anti-parallel
Strand 7	A	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	56	58	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	145	149	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	134	138	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	92	first strand
Strand 2	A	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	499	501	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	286	287	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	477	482	anti-parallel
Strand 4	A	464	470	anti-parallel
Strand 5	A	506	513	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	424	first strand
Strand 2	A	440	443	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJR