Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJU entry

There are 2 chains in PDB entry 8VJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15HIS 679
C
 PHE 4ARG 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8VJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 55Right-handed alpha
Helix 2
AA2
A
65 85Right-handed alpha
Helix 3
AA3
A
86 89Right-handed 310
Helix 4
AA4
A
92 115Right-handed alpha
Helix 5
AA5
A
116 130Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
136 153Right-handed alpha
Helix 8
AA8
A
158 185Right-handed alpha
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
221 232Right-handed alpha
Helix 12
AB3
A
234 246Right-handed alpha
Helix 13
AB4
A
249 272Right-handed alpha
Helix 14
AB5
A
275 282Right-handed alpha
Helix 15
AB6
A
288 326Right-handed alpha
Helix 16
AB7
A
334 336Right-handed 310
Helix 17
AB8
A
337 351Right-handed alpha
Helix 18
AB9
A
353 358Right-handed alpha
Helix 19
AC1
A
359 361Right-handed 310
Helix 20
AC2
A
362 379Right-handed alpha
Helix 21
AC3
A
465 485Right-handed alpha
Helix 22
AC4
A
489 493Right-handed 310
Helix 23
AC5
A
502 511Right-handed alpha
Helix 24
AC6
A
512 514Right-handed 310
Helix 25
AC7
A
515 523Right-handed alpha
Helix 26
AC8
A
533 543Right-handed alpha
Helix 27
AC9
A
544 546Right-handed 310
Helix 28
AD1
A
547 566Right-handed alpha
Helix 29
AD2
A
572 584Right-handed alpha
Helix 30
AD3
A
594 604Right-handed 310
Helix 31
AD4
A
611 627Right-handed alpha
Helix 32
AD5
A
635 646Right-handed alpha
Helix 33
AD6
A
654 664Right-handed alpha
Helix 34
AD7
A
669 675Right-handed alpha
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There are 2 sheets in PDB entry 8VJU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
216 219anti-parallel
Strand 3
A
209 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
445 450parallel
Strand 5
A
427 432anti-parallel
Strand 6
C
5 6anti-parallel
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