Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJV entry

There are 2 chains in PDB entry 8VJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15HIS 679
D
 TYR 1ARG 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8VJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 55Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
65 85Right-handed alpha
Helix 4
AA4
A
85 90Right-handed alpha
Helix 5
AA5
A
92 115Right-handed alpha
Helix 6
AA6
A
116 130Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
136 152Right-handed alpha
Helix 9
AA9
A
158 185Right-handed alpha
Helix 10
AB1
A
194 198Right-handed 310
Helix 11
AB2
A
201 206Right-handed alpha
Helix 12
AB3
A
221 232Right-handed alpha
Helix 13
AB4
A
234 246Right-handed alpha
Helix 14
AB5
A
249 271Right-handed alpha
Helix 15
AB6
A
275 282Right-handed alpha
Helix 16
AB7
A
288 326Right-handed alpha
Helix 17
AB8
A
334 336Right-handed 310
Helix 18
AB9
A
337 351Right-handed alpha
Helix 19
AC1
A
353 358Right-handed alpha
Helix 20
AC2
A
359 361Right-handed 310
Helix 21
AC3
A
362 378Right-handed alpha
Helix 22
AC4
A
465 485Right-handed alpha
Helix 23
AC5
A
489 493Right-handed 310
Helix 24
AC6
A
503 510Right-handed alpha
Helix 25
AC7
A
511 514Right-handed 310
Helix 26
AC8
A
515 523Right-handed alpha
Helix 27
AC9
A
533 543Right-handed alpha
Helix 28
AD1
A
544 546Right-handed 310
Helix 29
AD2
A
547 566Right-handed alpha
Helix 30
AD3
A
572 584Right-handed alpha
Helix 31
AD4
A
594 603Right-handed 310
Helix 32
AD5
A
611 627Right-handed alpha
Helix 33
AD6
A
635 646Right-handed alpha
Helix 34
AD7
A
654 664Right-handed alpha
Helix 35
AD8
A
669 676Right-handed alpha
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There are 2 sheets in PDB entry 8VJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
216 219anti-parallel
Strand 3
A
209 210anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
445 450parallel
Strand 5
A
427 432anti-parallel
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