Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJW entry

There are 2 chains in PDB entry 8VJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15HIS 679
B
 SER 15ALA 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8VJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 54Right-handed alpha
Helix 2
AA2
A
65 85Right-handed alpha
Helix 3
AA3
A
86 89Right-handed 310
Helix 4
AA4
A
92 115Right-handed alpha
Helix 5
AA5
A
116 130Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
136 152Right-handed alpha
Helix 8
AA8
A
158 185Right-handed alpha
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
221 232Right-handed alpha
Helix 12
AB3
A
234 246Right-handed alpha
Helix 13
AB4
A
249 271Right-handed alpha
Helix 14
AB5
A
275 282Right-handed alpha
Helix 15
AB6
A
288 303Right-handed alpha
Helix 16
AB7
A
303 326Right-handed alpha
Helix 17
AB8
A
334 336Right-handed 310
Helix 18
AB9
A
337 351Right-handed alpha
Helix 19
AC1
A
353 358Right-handed alpha
Helix 20
AC2
A
359 361Right-handed 310
Helix 21
AC3
A
362 378Right-handed alpha
Helix 22
AC4
A
465 485Right-handed alpha
Helix 23
AC5
A
489 493Right-handed 310
Helix 24
AC6
A
502 509Right-handed alpha
Helix 25
AC7
A
510 514Right-handed 310
Helix 26
AC8
A
515 523Right-handed alpha
Helix 27
AC9
A
533 543Right-handed alpha
Helix 28
AD1
A
547 566Right-handed alpha
Helix 29
AD2
A
572 584Right-handed alpha
Helix 30
AD3
A
595 604Right-handed 310
Helix 31
AD4
A
611 627Right-handed alpha
Helix 32
AD5
A
627 632Right-handed alpha
Helix 33
AD6
A
635 646Right-handed alpha
Helix 34
AD7
A
654 664Right-handed alpha
Helix 35
AD8
A
669 675Right-handed alpha
Helix 36
AD9
B
30 54Right-handed alpha
Helix 37
AE1
B
65 85Right-handed alpha
Helix 38
AE2
B
86 89Right-handed 310
Helix 39
AE3
B
92 115Right-handed alpha
Helix 40
AE4
B
116 130Right-handed alpha
Helix 41
AE5
B
131 135Right-handed 310
Helix 42
AE6
B
136 152Right-handed alpha
Helix 43
AE7
B
158 185Right-handed alpha
Helix 44
AE8
B
194 198Right-handed 310
Helix 45
AE9
B
201 206Right-handed alpha
Helix 46
AF1
B
221 232Right-handed alpha
Helix 47
AF2
B
234 246Right-handed alpha
Helix 48
AF3
B
249 271Right-handed alpha
Helix 49
AF4
B
275 282Right-handed alpha
Helix 50
AF5
B
288 303Right-handed alpha
Helix 51
AF6
B
303 326Right-handed alpha
Helix 52
AF7
B
334 336Right-handed 310
Helix 53
AF8
B
337 351Right-handed alpha
Helix 54
AF9
B
353 358Right-handed alpha
Helix 55
AG1
B
359 361Right-handed 310
Helix 56
AG2
B
362 378Right-handed alpha
Helix 57
AG3
B
465 485Right-handed alpha
Helix 58
AG4
B
489 493Right-handed 310
Helix 59
AG5
B
502 509Right-handed alpha
Helix 60
AG6
B
510 514Right-handed 310
Helix 61
AG7
B
515 523Right-handed alpha
Helix 62
AG8
B
533 543Right-handed alpha
Helix 63
AG9
B
547 566Right-handed alpha
Helix 64
AH1
B
572 584Right-handed alpha
Helix 65
AH2
B
595 604Right-handed 310
Helix 66
AH3
B
611 627Right-handed alpha
Helix 67
AH4
B
627 632Right-handed alpha
Helix 68
AH5
B
635 646Right-handed alpha
Helix 69
AH6
B
654 664Right-handed alpha
Helix 70
AH7
B
669 675Right-handed alpha
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There are 4 sheets in PDB entry 8VJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
216 219anti-parallel
Strand 3
A
209 210anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
445 450parallel
Strand 5
A
427 428anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
216 219anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 385first strand
Strand 2
B
395 402anti-parallel
Strand 3
B
408 415anti-parallel
Strand 4
B
445 450parallel
Strand 5
B
427 428anti-parallel
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