Analysis of interatomic Contacts of Structural Units in PDB entry:
8VJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VJX entry

There are 2 chains in PDB entry 8VJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15HIS 679
C
 PRO 3PHE 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8VJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 55Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
65 85Right-handed alpha
Helix 4
AA4
A
85 90Right-handed alpha
Helix 5
AA5
A
92 115Right-handed alpha
Helix 6
AA6
A
116 129Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
136 152Right-handed alpha
Helix 9
AA9
A
158 185Right-handed alpha
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
221 232Right-handed alpha
Helix 12
AB3
A
234 246Right-handed alpha
Helix 13
AB4
A
249 271Right-handed alpha
Helix 14
AB5
A
275 282Right-handed alpha
Helix 15
AB6
A
288 326Right-handed alpha
Helix 16
AB7
A
337 351Right-handed alpha
Helix 17
AB8
A
353 358Right-handed alpha
Helix 18
AB9
A
359 361Right-handed 310
Helix 19
AC1
A
362 378Right-handed alpha
Helix 20
AC2
A
465 484Right-handed alpha
Helix 21
AC3
A
489 493Right-handed 310
Helix 22
AC4
A
503 509Right-handed alpha
Helix 23
AC5
A
510 514Right-handed 310
Helix 24
AC6
A
515 523Right-handed alpha
Helix 25
AC7
A
533 542Right-handed alpha
Helix 26
AC8
A
543 546Right-handed 310
Helix 27
AC9
A
547 568Right-handed alpha
Helix 28
AD1
A
572 585Right-handed alpha
Helix 29
AD2
A
599 604Right-handed 310
Helix 30
AD3
A
611 627Right-handed alpha
Helix 31
AD4
A
635 646Right-handed alpha
Helix 32
AD5
A
649 653Right-handed 310
Helix 33
AD6
A
654 664Right-handed alpha
Helix 34
AD7
A
669 676Right-handed alpha
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There are 2 sheets in PDB entry 8VJX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
216 219anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 385first strand
Strand 2
A
395 402anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
445 450parallel
Strand 5
A
427 432anti-parallel
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