Analysis of interatomic Contacts of Structural Units in PDB entry:
8VK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VK1 entry

There are 6 chains in PDB entry 8VK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 1GLU 210
D
 ASP 1ASP 129
F
 GLU 1CYS 226
B
 SER 1GLU 210
C
 GLU 1SER 225
A
 ASP 1ASP 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8VK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
78 82Right-handed 310
Helix 2
AA2
E
121 127Right-handed alpha
Helix 3
AA3
E
181 188Right-handed alpha
Helix 4
AA4
D
71 75Right-handed 310
Helix 5
AA5
F
28 32Right-handed 310
Helix 6
AA6
F
87 91Right-handed 310
Helix 7
AA7
F
166 168Right-handed 310
Helix 8
AA8
F
197 199Right-handed 310
Helix 9
AA9
F
211 214Right-handed 310
Helix 10
AB1
B
26 30Right-handed 310
Helix 11
AB2
B
78 82Right-handed 310
Helix 12
AB3
B
121 126Right-handed alpha
Helix 13
AB4
B
181 188Right-handed alpha
Helix 14
AB5
C
28 32Right-handed 310
Helix 15
AB6
C
87 91Right-handed 310
Helix 16
AB7
C
166 168Right-handed 310
Helix 17
AB8
C
211 214Right-handed 310
Helix 18
AB9
A
71 75Right-handed 310
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There are 31 sheets in PDB entry 8VK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
101 105parallel
Strand 3
E
84 91anti-parallel
Strand 4
E
33 37anti-parallel
Strand 5
E
44 47anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
101 105parallel
Strand 3
E
84 91anti-parallel
Strand 4
E
94 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 23first strand
Strand 2
E
69 74anti-parallel
Strand 3
E
61 62anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
130 139anti-parallel
Strand 3
E
172 180anti-parallel
Strand 4
E
159 161anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
130 139anti-parallel
Strand 3
E
172 180anti-parallel
Strand 4
E
165 166anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 154first strand
Strand 2
E
145 150anti-parallel
Strand 3
E
191 197anti-parallel
Strand 4
E
200 206anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
13 17anti-parallel
Strand 3
D
34 42anti-parallel
Strand 4
D
85 93anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
116 122anti-parallel
Strand 3
D
104 111anti-parallel
Strand 4
D
51 58anti-parallel
Strand 5
D
61 63anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
125 128parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
117 121parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
45 51anti-parallel
Strand 6
F
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
117 121parallel
Strand 3
F
92 99anti-parallel
Strand 4
F
110 113anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
130 134first strand
Strand 2
F
145 155anti-parallel
Strand 3
F
186 195anti-parallel
Strand 4
F
173 175anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
130 134first strand
Strand 2
F
145 155anti-parallel
Strand 3
F
186 195anti-parallel
Strand 4
F
179 180anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
161 164first strand
Strand 2
F
204 210anti-parallel
Strand 3
F
215 221anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
101 105parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
33 37anti-parallel
Strand 5
B
44 47anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
101 105parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
94 97anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
61 62anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
65 66anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
130 139anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
159 161anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
130 139anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
165 166anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
200 206anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
110 113anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
145 155anti-parallel
Strand 3
C
186 195anti-parallel
Strand 4
C
173 175anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
145 155anti-parallel
Strand 3
C
186 195anti-parallel
Strand 4
C
179 180anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
204 210anti-parallel
Strand 3
C
215 221anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
34 42anti-parallel
Strand 4
A
85 93anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
116 122anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
61 63anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
125 128parallel
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