Analysis of interatomic Contacts of Structural Units in PDB entry:
8VK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VK5 entry

There is 1 chain in PDB entry 8VK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ILE 1GLN 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 8VK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
39 44Right-handed alpha
Helix 2
AA2
E
47 50Right-handed 310
Helix 3
AA3
E
209 218Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8VK5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 6first strand
Strand 2
E
141 148anti-parallel
Strand 3
E
157 160anti-parallel
Strand 4
E
201 205anti-parallel
Strand 5
E
182 189anti-parallel
Strand 6
E
176 179anti-parallel
Strand 7
E
121 126anti-parallel
Strand 8
E
141 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 20first strand
Strand 2
E
23 32anti-parallel
Strand 3
E
35 38anti-parallel
Strand 4
E
90 94anti-parallel
Strand 5
E
68 77anti-parallel
Strand 6
E
52 55anti-parallel
Strand 7
E
15 20anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il