Analysis of interatomic Contacts of Structural Units in PDB entry:
8VK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VK9 entry

There are 8 chains in PDB entry 8VK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO -3	MET 147
B	ASP -1	ARG 72
C	PRO -3	MET 147
D	ASP -3	ARG 72
E	LEU -2	MET 147
F	ASP -1	VAL 73
G	GLY -1	MET 147
H	ASP -2	ARG 72

There are 31 helices in PDB entry 8VK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	16	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	98	112	Right-handed alpha
Helix 4	AA4	A	120	130	Right-handed alpha
Helix 5	AA5	A	130	146	Right-handed alpha
Helix 6	AA6	B	22	35	Right-handed alpha
Helix 7	AA7	B	37	39	Right-handed 310
Helix 8	AA8	B	56	60	Right-handed 310
Helix 9	AA9	C	-1	16	Right-handed alpha
Helix 10	AB1	C	86	90	Right-handed 310
Helix 11	AB2	C	98	112	Right-handed alpha
Helix 12	AB3	C	120	130	Right-handed alpha
Helix 13	AB4	C	130	146	Right-handed alpha
Helix 14	AB5	D	22	35	Right-handed alpha
Helix 15	AB6	D	37	39	Right-handed 310
Helix 16	AB7	D	56	60	Right-handed 310
Helix 17	AB8	E	-1	16	Right-handed alpha
Helix 18	AB9	E	86	91	Right-handed alpha
Helix 19	AC1	E	98	112	Right-handed alpha
Helix 20	AC2	E	120	130	Right-handed alpha
Helix 21	AC3	E	130	147	Right-handed alpha
Helix 22	AC4	F	22	35	Right-handed alpha
Helix 23	AC5	F	37	39	Right-handed 310
Helix 24	AC6	F	56	60	Right-handed 310
Helix 25	AC7	G	0	16	Right-handed alpha
Helix 26	AC8	G	86	90	Right-handed 310
Helix 27	AC9	G	98	112	Right-handed alpha
Helix 28	AD1	G	120	130	Right-handed alpha
Helix 29	AD2	G	130	146	Right-handed alpha
Helix 30	AD3	H	22	35	Right-handed alpha
Helix 31	AD4	H	37	41	Right-handed 310

There are 8 sheets in PDB entry 8VK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	66	69	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	1	6	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	50	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	49	55	anti-parallel
Strand 4	C	66	69	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	1	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	32	38	anti-parallel
Strand 3	E	49	55	anti-parallel
Strand 4	E	66	69	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	17	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	24	first strand
Strand 2	G	32	38	anti-parallel
Strand 3	G	49	55	anti-parallel
Strand 4	G	66	69	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	1	6	anti-parallel
Strand 3	H	66	70	parallel
Strand 4	H	42	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VK9