Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VKH entry

There are 14 chains in PDB entry 8VKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	GLU 72
A	GLY 74	PHE 375
B	GLU 4	GLU 72
B	GLY 74	PHE 375
C	GLU 4	GLU 72
C	GLY 74	PHE 375
D	ASP 1	GLU 72
D	GLY 74	PHE 375
E	GLU 4	GLU 72
E	GLY 74	PHE 375
F	GLU 4	GLU 72
F	GLY 74	PHE 375
G	HIS 24	LEU 380
H	HIS 24	LEU 380

There are141 helices in PDB entry 8VKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	125	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	202	216	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	257	Right-handed alpha
Helix 11	AB2	A	258	263	Right-handed alpha
Helix 12	AB3	A	264	267	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	286	288	Right-handed 310
Helix 15	AB6	A	289	295	Right-handed alpha
Helix 16	AB7	A	301	306	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	336	Right-handed 310
Helix 19	AC1	A	337	347	Right-handed alpha
Helix 20	AC2	A	351	355	Right-handed 310
Helix 21	AC3	A	359	364	Right-handed alpha
Helix 22	AC4	A	368	374	Right-handed alpha
Helix 23	AC5	B	55	61	Right-handed alpha
Helix 24	AC6	B	78	92	Right-handed alpha
Helix 25	AC7	B	112	125	Right-handed alpha
Helix 26	AC8	B	137	146	Right-handed alpha
Helix 27	AC9	B	172	175	Right-handed 310
Helix 28	AD1	B	181	193	Right-handed alpha
Helix 29	AD2	B	194	197	Right-handed 310
Helix 30	AD3	B	205	217	Right-handed alpha
Helix 31	AD4	B	222	232	Right-handed alpha
Helix 32	AD5	B	252	257	Right-handed alpha
Helix 33	AD6	B	258	261	Right-handed 310
Helix 34	AD7	B	273	284	Right-handed alpha
Helix 35	AD8	B	289	294	Right-handed alpha
Helix 36	AD9	B	301	306	Right-handed 310
Helix 37	AE1	B	308	321	Right-handed alpha
Helix 38	AE2	B	337	348	Right-handed alpha
Helix 39	AE3	B	349	353	Right-handed 310
Helix 40	AE4	B	359	366	Right-handed alpha
Helix 41	AE5	B	368	374	Right-handed alpha
Helix 42	AE6	C	55	61	Right-handed alpha
Helix 43	AE7	C	78	92	Right-handed alpha
Helix 44	AE8	C	97	101	Right-handed 310
Helix 45	AE9	C	112	126	Right-handed alpha
Helix 46	AF1	C	137	146	Right-handed alpha
Helix 47	AF2	C	172	175	Right-handed 310
Helix 48	AF3	C	181	193	Right-handed alpha
Helix 49	AF4	C	194	196	Right-handed 310
Helix 50	AF5	C	205	217	Right-handed alpha
Helix 51	AF6	C	222	233	Right-handed alpha
Helix 52	AF7	C	252	257	Right-handed alpha
Helix 53	AF8	C	258	263	Right-handed alpha
Helix 54	AF9	C	264	268	Right-handed 310
Helix 55	AG1	C	273	284	Right-handed alpha
Helix 56	AG2	C	289	295	Right-handed alpha
Helix 57	AG3	C	301	305	Right-handed 310
Helix 58	AG4	C	308	321	Right-handed alpha
Helix 59	AG5	C	334	336	Right-handed 310
Helix 60	AG6	C	337	348	Right-handed alpha
Helix 61	AG7	C	359	366	Right-handed alpha
Helix 62	AG8	C	368	374	Right-handed alpha
Helix 63	AG9	D	55	61	Right-handed alpha
Helix 64	AH1	D	78	92	Right-handed alpha
Helix 65	AH2	D	97	101	Right-handed 310
Helix 66	AH3	D	112	126	Right-handed alpha
Helix 67	AH4	D	137	146	Right-handed alpha
Helix 68	AH5	D	172	175	Right-handed 310
Helix 69	AH6	D	181	193	Right-handed alpha
Helix 70	AH7	D	194	197	Right-handed 310
Helix 71	AH8	D	202	217	Right-handed alpha
Helix 72	AH9	D	222	233	Right-handed alpha
Helix 73	AI1	D	252	257	Right-handed alpha
Helix 74	AI2	D	258	263	Right-handed alpha
Helix 75	AI3	D	264	268	Right-handed 310
Helix 76	AI4	D	273	285	Right-handed alpha
Helix 77	AI5	D	286	288	Right-handed 310
Helix 78	AI6	D	289	295	Right-handed alpha
Helix 79	AI7	D	301	305	Right-handed 310
Helix 80	AI8	D	308	321	Right-handed alpha
Helix 81	AI9	D	337	349	Right-handed alpha
Helix 82	AJ1	D	350	355	Right-handed 310
Helix 83	AJ2	D	359	366	Right-handed alpha
Helix 84	AJ3	D	368	374	Right-handed alpha
Helix 85	AJ4	E	55	61	Right-handed alpha
Helix 86	AJ5	E	78	91	Right-handed alpha
Helix 87	AJ6	E	112	126	Right-handed alpha
Helix 88	AJ7	E	137	145	Right-handed alpha
Helix 89	AJ8	E	181	192	Right-handed alpha
Helix 90	AJ9	E	205	216	Right-handed alpha
Helix 91	AK1	E	222	233	Right-handed alpha
Helix 92	AK2	E	252	257	Right-handed alpha
Helix 93	AK3	E	258	261	Right-handed 310
Helix 94	AK4	E	263	268	Right-handed 310
Helix 95	AK5	E	273	285	Right-handed alpha
Helix 96	AK6	E	286	288	Right-handed 310
Helix 97	AK7	E	289	296	Right-handed alpha
Helix 98	AK8	E	301	305	Right-handed 310
Helix 99	AK9	E	308	321	Right-handed alpha
Helix 100	AL1	E	337	348	Right-handed alpha
Helix 101	AL2	E	359	364	Right-handed alpha
Helix 102	AL3	E	369	374	Right-handed alpha
Helix 103	AL4	F	55	61	Right-handed alpha
Helix 104	AL5	F	78	91	Right-handed alpha
Helix 105	AL6	F	112	126	Right-handed alpha
Helix 106	AL7	F	137	145	Right-handed alpha
Helix 107	AL8	F	181	192	Right-handed alpha
Helix 108	AL9	F	205	216	Right-handed alpha
Helix 109	AM1	F	223	233	Right-handed alpha
Helix 110	AM2	F	252	257	Right-handed alpha
Helix 111	AM3	F	258	261	Right-handed 310
Helix 112	AM4	F	263	267	Right-handed 310
Helix 113	AM5	F	273	284	Right-handed alpha
Helix 114	AM6	F	289	294	Right-handed alpha
Helix 115	AM7	F	301	305	Right-handed 310
Helix 116	AM8	F	308	321	Right-handed alpha
Helix 117	AM9	F	337	348	Right-handed alpha
Helix 118	AN1	F	359	364	Right-handed alpha
Helix 119	AN2	F	368	374	Right-handed alpha
Helix 120	AN3	G	29	35	Right-handed 310
Helix 121	AN4	G	55	59	Right-handed 310
Helix 122	AN5	G	94	112	Right-handed alpha
Helix 123	AN6	G	127	134	Right-handed alpha
Helix 124	AN7	G	179	183	Right-handed 310
Helix 125	AN8	G	206	223	Right-handed alpha
Helix 126	AN9	G	240	248	Right-handed alpha
Helix 127	AO1	G	261	269	Right-handed alpha
Helix 128	AO2	G	297	299	Right-handed 310
Helix 129	AO3	G	324	343	Right-handed alpha
Helix 130	AO4	G	359	364	Right-handed alpha
Helix 131	AO5	H	29	35	Right-handed 310
Helix 132	AO6	H	55	59	Right-handed 310
Helix 133	AO7	H	94	112	Right-handed alpha
Helix 134	AO8	H	127	134	Right-handed alpha
Helix 135	AO9	H	179	183	Right-handed 310
Helix 136	AP1	H	206	223	Right-handed alpha
Helix 137	AP2	H	240	248	Right-handed alpha
Helix 138	AP3	H	261	269	Right-handed alpha
Helix 139	AP4	H	295	299	Right-handed 310
Helix 140	AP5	H	324	342	Right-handed alpha
Helix 141	AP6	H	359	364	Right-handed alpha

There are 45 sheets in PDB entry 8VKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	169	170	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	D	41	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	8	11	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	17	21	anti-parallel
Strand 3	F	8	11	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	53	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	67	75	anti-parallel
Strand 4	G	81	89	anti-parallel
Strand 5	G	120	122	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	63	first strand
Strand 2	G	139	141	parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	175	first strand
Strand 2	G	161	166	anti-parallel
Strand 3	G	188	193	anti-parallel
Strand 4	G	196	201	anti-parallel
Strand 5	G	230	234	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	285	289	first strand
Strand 2	G	273	276	anti-parallel
Strand 3	G	304	309	anti-parallel
Strand 4	G	314	319	anti-parallel
Strand 5	G	349	353	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	295	first strand
Strand 2	G	366	367	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	40	46	anti-parallel
Strand 3	H	68	75	anti-parallel
Strand 4	H	81	89	anti-parallel
Strand 5	H	120	122	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	139	141	parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	175	first strand
Strand 2	H	161	166	anti-parallel
Strand 3	H	188	192	anti-parallel
Strand 4	H	196	201	anti-parallel
Strand 5	H	230	234	parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	285	289	first strand
Strand 2	H	273	276	anti-parallel
Strand 3	H	304	309	anti-parallel
Strand 4	H	314	319	anti-parallel
Strand 5	H	349	353	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKH