Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VKI entry

There are 34 chains in PDB entry 8VKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	ALA 2	GLY 60
3	ALA 2	ALA 24
4	GLU 5	ALA 470
B	G 1	C 118
C	GLY 2	LYS 276
D	ALA 2	GLY 215
E	THR 2	LYS 210
F	LYS 6	ASN 187
G	SER 2	THR 177
H	MET 1	GLN 151
I	MET 1	LEU 126
J	LEU 10	VAL 141
K	PRO 2	GLN 147
L	MET 1	LEU 122
M	VAL 3	LEU 147
N	MET 1	GLU 136
O	PRO 2	LYS 119
P	ALA 2	PHE 127
Q	MET 1	ARG 113
R	ALA 2	SER 125
S	THR 3	ILE 102
T	GLU 6	PRO 119
U	ALA 2	ALA 98
V	MET 1	ILE 105
W	PRO 8	ARG 102
X	SER 8	PRO 86
Y	ALA 2	ALA 64
Z	GLY 4	GLY 67
b	ALA 2	ASP 55
c	ASP 6	SER 54
d	ALA 2	ALA 47
e	PRO 2	GLY 64
f	MET 1	GLY 37
A	A 2	C 3120

There are114 helices in PDB entry 8VKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	16	27	Right-handed alpha
Helix 2	AA2	2	40	51	Right-handed alpha
Helix 3	AA3	3	3	11	Right-handed alpha
Helix 4	AA4	4	59	77	Right-handed alpha
Helix 5	AA5	4	101	111	Right-handed alpha
Helix 6	AA6	4	125	137	Right-handed alpha
Helix 7	AA7	4	142	155	Right-handed alpha
Helix 8	AA8	4	157	173	Right-handed alpha
Helix 9	AA9	4	178	186	Right-handed alpha
Helix 10	AB1	4	195	199	Right-handed 310
Helix 11	AB2	4	201	205	Right-handed 310
Helix 12	AB3	4	211	232	Right-handed alpha
Helix 13	AB4	4	232	244	Right-handed alpha
Helix 14	AB5	4	257	265	Right-handed alpha
Helix 15	AB6	4	315	324	Right-handed alpha
Helix 16	AB7	4	340	357	Right-handed alpha
Helix 17	AB8	4	399	410	Right-handed alpha
Helix 18	AB9	4	423	425	Right-handed 310
Helix 19	AC1	4	426	436	Right-handed alpha
Helix 20	AC2	4	456	461	Right-handed alpha
Helix 21	AC3	C	10	14	Right-handed 310
Helix 22	AC4	C	134	136	Right-handed 310
Helix 23	AC5	C	200	204	Right-handed 310
Helix 24	AC6	C	208	214	Right-handed alpha
Helix 25	AC7	C	222	226	Right-handed 310
Helix 26	AC8	C	263	267	Right-handed 310
Helix 27	AC9	D	41	46	Right-handed alpha
Helix 28	AD1	D	63	73	Right-handed alpha
Helix 29	AD2	D	88	92	Right-handed 310
Helix 30	AD3	D	102	106	Right-handed 310
Helix 31	AD4	D	125	130	Right-handed alpha
Helix 32	AD5	E	30	46	Right-handed alpha
Helix 33	AD6	E	103	121	Right-handed alpha
Helix 34	AD7	E	137	149	Right-handed alpha
Helix 35	AD8	E	162	171	Right-handed alpha
Helix 36	AD9	E	179	183	Right-handed 310
Helix 37	AE1	E	184	190	Right-handed alpha
Helix 38	AE2	E	198	209	Right-handed alpha
Helix 39	AE3	F	9	27	Right-handed alpha
Helix 40	AE4	F	56	68	Right-handed alpha
Helix 41	AE5	F	100	112	Right-handed alpha
Helix 42	AE6	F	125	129	Right-handed 310
Helix 43	AE7	F	149	153	Right-handed 310
Helix 44	AE8	F	169	179	Right-handed alpha
Helix 45	AE9	G	59	82	Right-handed alpha
Helix 46	AF1	G	138	151	Right-handed alpha
Helix 47	AF2	H	22	27	Right-handed alpha
Helix 48	AF3	H	46	59	Right-handed alpha
Helix 49	AF4	H	64	72	Right-handed alpha
Helix 50	AF5	H	98	108	Right-handed alpha
Helix 51	AF6	H	118	123	Right-handed alpha
Helix 52	AF7	I	2	20	Right-handed alpha
Helix 53	AF8	I	32	43	Right-handed alpha
Helix 54	AF9	I	53	64	Right-handed alpha
Helix 55	AG1	I	68	73	Right-handed 310
Helix 56	AG2	I	90	100	Right-handed alpha
Helix 57	AG3	J	22	32	Right-handed alpha
Helix 58	AG4	J	36	49	Right-handed alpha
Helix 59	AG5	J	79	84	Right-handed alpha
Helix 60	AG6	J	103	115	Right-handed alpha
Helix 61	AG7	J	116	118	Right-handed 310
Helix 62	AG8	J	122	136	Right-handed alpha
Helix 63	AG9	K	26	38	Right-handed alpha
Helix 64	AH1	K	89	96	Right-handed alpha
Helix 65	AH2	K	96	108	Right-handed alpha
Helix 66	AH3	K	112	120	Right-handed alpha
Helix 67	AH4	L	104	109	Right-handed alpha
Helix 68	AH5	L	113	118	Right-handed alpha
Helix 69	AH6	M	39	44	Right-handed alpha
Helix 70	AH7	M	80	87	Right-handed alpha
Helix 71	AH8	M	94	99	Right-handed alpha
Helix 72	AH9	M	130	140	Right-handed alpha
Helix 73	AI1	N	44	58	Right-handed alpha
Helix 74	AI2	N	110	123	Right-handed alpha
Helix 75	AI3	O	13	32	Right-handed alpha
Helix 76	AI4	O	38	57	Right-handed alpha
Helix 77	AI5	O	59	71	Right-handed alpha
Helix 78	AI6	O	73	82	Right-handed alpha
Helix 79	AI7	O	82	87	Right-handed alpha
Helix 80	AI8	P	9	27	Right-handed alpha
Helix 81	AI9	P	67	72	Right-handed alpha
Helix 82	AJ1	P	76	96	Right-handed alpha
Helix 83	AJ2	P	111	123	Right-handed alpha
Helix 84	AJ3	Q	96	102	Right-handed 310
Helix 85	AJ4	Q	103	107	Right-handed 310
Helix 86	AJ5	R	9	21	Right-handed alpha
Helix 87	AJ6	R	25	30	Right-handed 310
Helix 88	AJ7	R	31	71	Right-handed alpha
Helix 89	AJ8	R	75	87	Right-handed alpha
Helix 90	AJ9	R	91	101	Right-handed alpha
Helix 91	AK1	R	102	117	Right-handed alpha
Helix 92	AK2	S	51	56	Right-handed alpha
Helix 93	AK3	T	20	29	Right-handed alpha
Helix 94	AK4	T	30	32	Right-handed 310
Helix 95	AK5	T	35	46	Right-handed alpha
Helix 96	AK6	T	50	68	Right-handed alpha
Helix 97	AK7	U	6	9	Right-handed 310
Helix 98	AK8	U	17	26	Right-handed alpha
Helix 99	AK9	U	38	51	Right-handed alpha
Helix 100	AL1	W	20	30	Right-handed alpha
Helix 101	AL2	W	52	61	Right-handed alpha
Helix 102	AL3	Y	53	58	Right-handed alpha
Helix 103	AL4	Z	14	39	Right-handed alpha
Helix 104	AL5	Z	45	67	Right-handed alpha
Helix 105	AL6	b	9	17	Right-handed alpha
Helix 106	AL7	b	18	20	Right-handed 310
Helix 107	AL8	b	43	50	Right-handed alpha
Helix 108	AL9	d	11	19	Right-handed alpha
Helix 109	AM1	d	20	26	Right-handed alpha
Helix 110	AM2	d	27	41	Right-handed alpha
Helix 111	AM3	e	37	44	Right-handed alpha
Helix 112	AM4	e	51	53	Right-handed 310
Helix 113	AM5	e	54	64	Right-handed alpha
Helix 114	AM6	f	29	32	Right-handed 310

There are 51 sheets in PDB entry 8VKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	34	35	first strand
Strand 2	2	6	8	anti-parallel
Strand 3	2	54	56	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	83	87	first strand
Strand 2	4	50	54	parallel
Strand 3	4	118	119	parallel
Strand 4	4	140	141	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	283	288	first strand
Strand 2	4	294	299	anti-parallel
Strand 3	4	247	252	parallel
Strand 4	4	327	333	parallel
Strand 5	4	364	369	parallel
Strand 6	4	390	391	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	416	420	first strand
Strand 2	4	451	455	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	60	63	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	106	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	141	143	anti-parallel
Strand 4	C	163	167	anti-parallel
Strand 5	C	172	176	anti-parallel
Strand 6	C	182	186	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	153	155	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	17	first strand
Strand 2	D	23	31	anti-parallel
Strand 3	D	191	195	anti-parallel
Strand 4	D	174	186	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	205	210	anti-parallel
Strand 7	D	5	17	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	84	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	168	170	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	E	14	20	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	127	first strand
Strand 2	E	193	197	parallel
Strand 3	E	154	157	parallel
Strand 4	E	176	178	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	38	43	anti-parallel
Strand 3	F	160	165	anti-parallel
Strand 4	F	137	138	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	94	95	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	G	35	36	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	131	134	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	100	first strand
Strand 2	G	103	106	anti-parallel
Strand 3	G	114	116	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	36	37	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	133	first strand
Strand 2	H	143	144	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	27	first strand
Strand 2	I	77	78	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	110	first strand
Strand 2	I	114	116	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	122	124	first strand
Strand 2	K	53	57	parallel
Strand 3	K	15	19	parallel
Strand 4	K	138	139	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	73	77	first strand
Strand 2	K	84	88	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	10	first strand
Strand 2	L	16	24	anti-parallel
Strand 3	L	38	46	anti-parallel
Strand 4	L	57	64	anti-parallel
Strand 5	L	83	87	anti-parallel
Strand 6	L	7	10	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	76	77	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	76	79	first strand
Strand 2	M	110	113	parallel
Strand 3	M	128	129	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	124	126	first strand
Strand 2	M	144	146	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	64	66	first strand
Strand 2	N	102	106	anti-parallel
Strand 3	N	32	36	anti-parallel
Strand 4	N	129	133	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	43	first strand
Strand 2	N	89	97	anti-parallel
Strand 3	N	72	76	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	37	first strand
Strand 2	O	110	115	anti-parallel
Strand 3	O	95	100	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	64	first strand
Strand 2	P	48	52	anti-parallel
Strand 3	P	37	41	anti-parallel
Strand 4	P	101	103	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	67	74	first strand
Strand 2	Q	57	64	anti-parallel
Strand 3	Q	38	48	anti-parallel
Strand 4	Q	24	31	anti-parallel
Strand 5	Q	80	87	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	15	16	first strand
Strand 2	S	4	7	anti-parallel
Strand 3	S	36	43	anti-parallel
Strand 4	S	59	69	anti-parallel
Strand 5	S	93	101	anti-parallel
Strand 6	S	21	25	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	73	79	first strand
Strand 2	S	84	90	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9	13	first strand
Strand 2	T	111	116	anti-parallel
Strand 3	T	76	82	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	85	95	first strand
Strand 2	T	99	108	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	11	14	first strand
Strand 2	U	28	33	anti-parallel
Strand 3	U	79	86	anti-parallel
Strand 4	U	54	62	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	66	67	first strand
Strand 2	V	32	35	anti-parallel
Strand 3	V	20	25	anti-parallel
Strand 4	V	8	11	anti-parallel
Strand 5	V	71	74	anti-parallel
Strand 6	V	80	81	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	40	41	first strand
Strand 2	V	62	63	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	83	88	first strand
Strand 2	V	93	98	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	13	15	first strand
Strand 2	W	45	50	anti-parallel
Strand 3	W	32	38	anti-parallel
Strand 4	W	95	99	parallel
Strand 5	W	78	82	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	30	31	first strand
Strand 2	X	65	72	anti-parallel
Strand 3	X	75	81	anti-parallel
Strand 4	X	46	47	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	36	38	first strand
Strand 2	X	59	61	anti-parallel
Strand 3	X	51	53	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	13	17	first strand
Strand 2	Y	25	29	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	33	38	first strand
Strand 2	Y	47	52	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	31	first strand
Strand 2	b	36	40	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	21	26	first strand
Strand 2	c	10	15	anti-parallel
Strand 3	c	47	53	anti-parallel
Strand 4	c	37	42	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	15	16	first strand
Strand 2	e	22	23	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	2	4	first strand
Strand 2	f	34	36	parallel
Strand 3	f	23	27	anti-parallel
Strand 4	f	14	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKI