Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VKJ entry

There are 2 chains in PDB entry 8VKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 76ILE 663
B
 ALA 75ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8VKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
196 228Right-handed alpha
Helix 2
AA2
A
269 287Right-handed alpha
Helix 3
AA3
A
288 296Right-handed 310
Helix 4
AA4
A
304 307Right-handed 310
Helix 5
AA5
A
308 331Right-handed alpha
Helix 6
AA6
A
334 357Right-handed alpha
Helix 7
AA7
A
367 371Right-handed 310
Helix 8
AA8
A
375 394Right-handed alpha
Helix 9
AA9
A
414 416Right-handed 310
Helix 10
AB1
A
417 437Right-handed alpha
Helix 11
AB2
A
453 458Right-handed 310
Helix 12
AB3
A
465 475Right-handed alpha
Helix 13
AB4
A
476 480Right-handed 310
Helix 14
AB5
A
484 488Right-handed 310
Helix 15
AB6
A
502 524Right-handed alpha
Helix 16
AB7
A
527 551Right-handed alpha
Helix 17
AB8
A
567 590Right-handed alpha
Helix 18
AB9
A
600 606Right-handed alpha
Helix 19
AC1
A
606 617Right-handed alpha
Helix 20
AC2
A
632 657Right-handed alpha
Helix 21
AC3
B
191 196Right-handed alpha
Helix 22
AC4
B
197 228Right-handed alpha
Helix 23
AC5
B
269 287Right-handed alpha
Helix 24
AC6
B
288 296Right-handed 310
Helix 25
AC7
B
304 307Right-handed 310
Helix 26
AC8
B
308 331Right-handed alpha
Helix 27
AC9
B
334 356Right-handed alpha
Helix 28
AD1
B
367 371Right-handed 310
Helix 29
AD2
B
375 394Right-handed alpha
Helix 30
AD3
B
411 416Right-handed alpha
Helix 31
AD4
B
417 438Right-handed alpha
Helix 32
AD5
B
454 458Right-handed 310
Helix 33
AD6
B
465 476Right-handed alpha
Helix 34
AD7
B
477 480Right-handed 310
Helix 35
AD8
B
484 488Right-handed 310
Helix 36
AD9
B
502 524Right-handed alpha
Helix 37
AE1
B
527 551Right-handed alpha
Helix 38
AE2
B
567 590Right-handed alpha
Helix 39
AE3
B
600 605Right-handed alpha
Helix 40
AE4
B
606 617Right-handed alpha
Helix 41
AE5
B
632 658Right-handed alpha
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There are 5 sheets in PDB entry 8VKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
83 88anti-parallel
Strand 3
A
162 169parallel
Strand 4
A
177 183anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
138 142anti-parallel
Strand 4
A
149 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 132first strand
Strand 2
B
81 89anti-parallel
Strand 3
B
162 168parallel
Strand 4
B
178 179anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 132first strand
Strand 2
B
81 89anti-parallel
Strand 3
B
162 168parallel
Strand 4
B
182 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 115first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
B
149 154anti-parallel
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