Analysis of interatomic Contacts of Structural Units in PDB entry:
8VKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VKT entry

There is 1 chain in PDB entry 8VKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3ALA 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8VKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
105 123Right-handed alpha
Helix 5
AA5
A
142 152Right-handed alpha
Helix 6
AA6
A
193 197Right-handed 310
Helix 7
AA7
A
199 222Right-handed alpha
Helix 8
AA8
A
263 280Right-handed alpha
Helix 9
AA9
A
303 311Right-handed alpha
Helix 10
AB1
A
327 332Right-handed alpha
Helix 11
AB2
A
360 378Right-handed alpha
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There are 5 sheets in PDB entry 8VKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
50 59anti-parallel
Strand 3
A
128 135anti-parallel
Strand 4
A
64 71parallel
Strand 5
A
159 162parallel
Strand 6
A
339 342parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
357 359anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
319 322parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 239first strand
Strand 2
A
249 258anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
286 294anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
228 229anti-parallel
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