Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VLC entry

There is 1 chain in PDB entry 8VLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ALA 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8VLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 42Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
110 115Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
131 140Right-handed alpha
Helix 8
AA8
A
222 236Right-handed alpha
Helix 9
AA9
A
246 250Right-handed 310
Helix 10
AB1
A
251 260Right-handed alpha
Helix 11
AB2
A
271 290Right-handed alpha
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There are 2 sheets in PDB entry 8VLC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
54 56anti-parallel
Strand 3
A
65 67anti-parallel
Strand 4
A
73 76anti-parallel
Strand 5
A
101 105parallel
Strand 6
A
127 130parallel
Strand 7
A
161 162parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
200 204anti-parallel
Strand 5
A
241 244parallel
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