Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VLH entry

There are 2 chains in PDB entry 8VLH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2583	PRO 2830
B	PRO 2582	ASP 2823

There are 11 helices in PDB entry 8VLH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2687	2691	Right-handed 310
Helix 2	AA2	A	2695	2699	Right-handed 310
Helix 3	AA3	A	2724	2728	Right-handed 310
Helix 4	AA4	A	2763	2769	Right-handed alpha
Helix 5	AA5	A	2776	2778	Right-handed 310
Helix 6	AA6	B	2611	2615	Right-handed alpha
Helix 7	AA7	B	2687	2691	Right-handed 310
Helix 8	AA8	B	2695	2699	Right-handed 310
Helix 9	AA9	B	2724	2728	Right-handed 310
Helix 10	AB1	B	2763	2769	Right-handed alpha
Helix 11	AB2	B	2776	2778	Right-handed 310

There are 11 sheets in PDB entry 8VLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2599	2601	first strand
Strand 2	A	2608	2610	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2637	2638	first strand
Strand 2	A	2651	2658	anti-parallel
Strand 3	A	2700	2709	anti-parallel
Strand 4	A	2715	2723	anti-parallel
Strand 5	A	2742	2751	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2661	2664	first strand
Strand 2	A	2651	2658	anti-parallel
Strand 3	A	2700	2709	anti-parallel
Strand 4	A	2668	2671	anti-parallel
Strand 5	A	2755	2762	anti-parallel
Strand 6	A	2780	2782	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2770	2772	first strand
Strand 2	A	2811	2813	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2785	2787	first strand
Strand 2	A	2794	2796	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2599	2601	first strand
Strand 2	B	2608	2610	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2637	2638	first strand
Strand 2	B	2651	2658	anti-parallel
Strand 3	B	2700	2709	anti-parallel
Strand 4	B	2715	2723	anti-parallel
Strand 5	B	2742	2751	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2661	2664	first strand
Strand 2	B	2651	2658	anti-parallel
Strand 3	B	2700	2709	anti-parallel
Strand 4	B	2668	2671	anti-parallel
Strand 5	B	2755	2762	anti-parallel
Strand 6	B	2780	2782	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2675	2677	first strand
Strand 2	B	2683	2685	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2770	2772	first strand
Strand 2	B	2811	2813	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2785	2786	first strand
Strand 2	B	2795	2796	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VLH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLH