Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VLU entry

There are 2 chains in PDB entry 8VLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 77ILE 663
A
 LEU 77ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8VLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
197 228Right-handed alpha
Helix 2
AA2
B
269 287Right-handed alpha
Helix 3
AA3
B
288 292Right-handed 310
Helix 4
AA4
B
308 330Right-handed alpha
Helix 5
AA5
B
334 356Right-handed alpha
Helix 6
AA6
B
375 394Right-handed alpha
Helix 7
AA7
B
411 416Right-handed alpha
Helix 8
AA8
B
417 438Right-handed alpha
Helix 9
AA9
B
454 458Right-handed 310
Helix 10
AB1
B
465 475Right-handed alpha
Helix 11
AB2
B
486 491Right-handed alpha
Helix 12
AB3
B
502 524Right-handed alpha
Helix 13
AB4
B
527 551Right-handed alpha
Helix 14
AB5
B
567 590Right-handed alpha
Helix 15
AB6
B
602 605Right-handed 310
Helix 16
AB7
B
606 617Right-handed alpha
Helix 17
AB8
B
632 657Right-handed alpha
Helix 18
AB9
A
194 220Right-handed alpha
Helix 19
AC1
A
269 287Right-handed alpha
Helix 20
AC2
A
288 296Right-handed 310
Helix 21
AC3
A
305 307Right-handed 310
Helix 22
AC4
A
308 332Right-handed alpha
Helix 23
AC5
A
334 357Right-handed alpha
Helix 24
AC6
A
375 394Right-handed alpha
Helix 25
AC7
A
411 416Right-handed alpha
Helix 26
AC8
A
417 437Right-handed alpha
Helix 27
AC9
A
454 458Right-handed 310
Helix 28
AD1
A
465 475Right-handed alpha
Helix 29
AD2
A
484 488Right-handed 310
Helix 30
AD3
A
502 524Right-handed alpha
Helix 31
AD4
A
527 551Right-handed alpha
Helix 32
AD5
A
567 590Right-handed alpha
Helix 33
AD6
A
597 606Right-handed alpha
Helix 34
AD7
A
606 617Right-handed alpha
Helix 35
AD8
A
632 657Right-handed alpha
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There are 4 sheets in PDB entry 8VLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 132first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
164 167parallel
Strand 4
B
179 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 115first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
138 142anti-parallel
Strand 4
B
149 154anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 132first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
164 169parallel
Strand 4
A
177 182anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
138 142anti-parallel
Strand 4
A
149 154anti-parallel
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