Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VLV entry

There are 2 chains in PDB entry 8VLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 75ILE 663
B
 GLU 76TRP 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8VLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
194 202Right-handed alpha
Helix 2
AA2
A
202 223Right-handed alpha
Helix 3
AA3
A
270 287Right-handed alpha
Helix 4
AA4
A
288 292Right-handed 310
Helix 5
AA5
A
304 308Right-handed 310
Helix 6
AA6
A
309 332Right-handed alpha
Helix 7
AA7
A
334 357Right-handed alpha
Helix 8
AA8
A
375 394Right-handed alpha
Helix 9
AA9
A
411 416Right-handed alpha
Helix 10
AB1
A
417 438Right-handed alpha
Helix 11
AB2
A
454 458Right-handed 310
Helix 12
AB3
A
465 476Right-handed alpha
Helix 13
AB4
A
484 489Right-handed 310
Helix 14
AB5
A
501 524Right-handed alpha
Helix 15
AB6
A
527 551Right-handed alpha
Helix 16
AB7
A
567 590Right-handed alpha
Helix 17
AB8
A
602 605Right-handed 310
Helix 18
AB9
A
606 617Right-handed alpha
Helix 19
AC1
A
632 657Right-handed alpha
Helix 20
AC2
B
195 228Right-handed alpha
Helix 21
AC3
B
269 287Right-handed alpha
Helix 22
AC4
B
288 292Right-handed 310
Helix 23
AC5
B
304 307Right-handed 310
Helix 24
AC6
B
308 331Right-handed alpha
Helix 25
AC7
B
334 357Right-handed alpha
Helix 26
AC8
B
375 394Right-handed alpha
Helix 27
AC9
B
414 416Right-handed 310
Helix 28
AD1
B
417 438Right-handed alpha
Helix 29
AD2
B
453 458Right-handed 310
Helix 30
AD3
B
465 475Right-handed alpha
Helix 31
AD4
B
486 491Right-handed alpha
Helix 32
AD5
B
503 524Right-handed alpha
Helix 33
AD6
B
527 551Right-handed alpha
Helix 34
AD7
B
567 590Right-handed alpha
Helix 35
AD8
B
600 606Right-handed alpha
Helix 36
AD9
B
606 617Right-handed alpha
Helix 37
AE1
B
632 657Right-handed alpha
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There are 4 sheets in PDB entry 8VLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 132first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
164 168parallel
Strand 4
A
178 182anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
148 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
164 169parallel
Strand 4
B
177 181anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 115first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
138 142anti-parallel
Strand 4
B
149 153anti-parallel
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