Analysis of interatomic Contacts of Structural Units in PDB entry:
8VLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VLW entry

There are 7 chains in PDB entry 8VLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLY 226
E
 THR 8GLY 226
D
 THR 8GLY 226
C
 SER 7GLY 226
B
 THR 8GLY 226
F
 GLY 7SER 45
G
 PHE 9SER 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8VLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
19 62Right-handed alpha
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
82 100Right-handed alpha
Helix 5
AA5
A
103 127Right-handed alpha
Helix 6
AA6
A
129 158Right-handed alpha
Helix 7
AA7
A
166 226Right-handed alpha
Helix 8
AA8
E
9 16Right-handed alpha
Helix 9
AA9
E
19 62Right-handed alpha
Helix 10
AB1
E
66 77Right-handed alpha
Helix 11
AB2
E
82 99Right-handed alpha
Helix 12
AB3
E
103 127Right-handed alpha
Helix 13
AB4
E
129 160Right-handed alpha
Helix 14
AB5
E
170 226Right-handed alpha
Helix 15
AB6
D
10 17Right-handed alpha
Helix 16
AB7
D
19 62Right-handed alpha
Helix 17
AB8
D
66 77Right-handed alpha
Helix 18
AB9
D
82 99Right-handed alpha
Helix 19
AC1
D
103 127Right-handed alpha
Helix 20
AC2
D
129 159Right-handed alpha
Helix 21
AC3
D
166 226Right-handed alpha
Helix 22
AC4
C
10 17Right-handed alpha
Helix 23
AC5
C
19 62Right-handed alpha
Helix 24
AC6
C
66 77Right-handed alpha
Helix 25
AC7
C
82 97Right-handed alpha
Helix 26
AC8
C
103 127Right-handed alpha
Helix 27
AC9
C
129 162Right-handed alpha
Helix 28
AD1
C
166 226Right-handed alpha
Helix 29
AD2
B
10 17Right-handed alpha
Helix 30
AD3
B
19 62Right-handed alpha
Helix 31
AD4
B
66 77Right-handed alpha
Helix 32
AD5
B
82 100Right-handed alpha
Helix 33
AD6
B
103 127Right-handed alpha
Helix 34
AD7
B
129 160Right-handed alpha
Helix 35
AD8
B
170 187Right-handed alpha
Helix 36
AD9
B
188 226Right-handed alpha
Helix 37
AE1
F
25 44Right-handed alpha
Helix 38
AE2
G
24 40Right-handed alpha
Helix 39
AE3
G
41 43Right-handed 310
Back to top of page
There are no sheets in PDB entry 8VLW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il