Analysis of interatomic Contacts of Structural Units in PDB entry:
8VM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VM2 entry

There are 3 chains in PDB entry 8VM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4LYS 170
B
 LEU -4LEU 171
C
 MET 1LEU 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8VM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
61 66Right-handed 310
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
92 105Right-handed alpha
Helix 6
AA6
A
126 138Right-handed alpha
Helix 7
AA7
A
151 170Right-handed alpha
Helix 8
AA8
B
15 26Right-handed alpha
Helix 9
AA9
B
61 66Right-handed 310
Helix 10
AB1
B
67 75Right-handed alpha
Helix 11
AB2
B
86 92Right-handed alpha
Helix 12
AB3
B
92 105Right-handed alpha
Helix 13
AB4
B
126 138Right-handed alpha
Helix 14
AB5
B
151 171Right-handed alpha
Helix 15
AB6
C
15 26Right-handed alpha
Helix 16
AB7
C
61 65Right-handed 310
Helix 17
AB8
C
67 75Right-handed alpha
Helix 18
AB9
C
86 92Right-handed alpha
Helix 19
AC1
C
92 105Right-handed alpha
Helix 20
AC2
C
126 138Right-handed alpha
Helix 21
AC3
C
151 170Right-handed alpha
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There are 5 sheets in PDB entry 8VM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-3 -2first strand
Strand 2
A
1 9anti-parallel
Strand 3
A
49 58parallel
Strand 4
A
37 46anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-3 -2first strand
Strand 2
A
1 9anti-parallel
Strand 3
A
77 83parallel
Strand 4
A
111 116parallel
Strand 5
A
141 143parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-3 -2first strand
Strand 2
B
1 9anti-parallel
Strand 3
B
49 58parallel
Strand 4
B
37 46anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-3 -2first strand
Strand 2
B
1 9anti-parallel
Strand 3
B
77 83parallel
Strand 4
B
111 116parallel
Strand 5
B
141 143parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 46first strand
Strand 2
C
49 58anti-parallel
Strand 3
C
2 10parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
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