Analysis of interatomic Contacts of Structural Units in PDB entry:
8VM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VM4 entry

There are 4 chains in PDB entry 8VM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 263	LYS 960
B	SER 263	LYS 960
C	SER 263	LYS 960
D	SER 263	LYS 960

There are120 helices in PDB entry 8VM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	279	Right-handed alpha
Helix 2	AA2	A	284	288	Right-handed 310
Helix 3	AA3	A	300	310	Right-handed alpha
Helix 4	AA4	A	352	370	Right-handed alpha
Helix 5	AA5	A	413	427	Right-handed alpha
Helix 6	AA6	A	442	445	Right-handed 310
Helix 7	AA7	A	446	456	Right-handed alpha
Helix 8	AA8	A	468	475	Right-handed alpha
Helix 9	AA9	A	478	488	Right-handed alpha
Helix 10	AB1	A	511	525	Right-handed alpha
Helix 11	AB2	A	526	531	Right-handed alpha
Helix 12	AB3	A	535	539	Right-handed 310
Helix 13	AB4	A	540	582	Right-handed alpha
Helix 14	AB5	A	589	609	Right-handed alpha
Helix 15	AB6	A	612	636	Right-handed alpha
Helix 16	AB7	A	636	642	Right-handed alpha
Helix 17	AB8	A	645	664	Right-handed alpha
Helix 18	AB9	A	664	686	Right-handed alpha
Helix 19	AC1	A	689	693	Right-handed 310
Helix 20	AC2	A	695	712	Right-handed alpha
Helix 21	AC3	A	716	731	Right-handed alpha
Helix 22	AC4	A	737	767	Right-handed alpha
Helix 23	AC5	A	770	778	Right-handed alpha
Helix 24	AC6	A	782	802	Right-handed alpha
Helix 25	AC7	A	810	824	Right-handed alpha
Helix 26	AC8	A	829	857	Right-handed alpha
Helix 27	AC9	A	859	865	Right-handed alpha
Helix 28	AD1	A	874	920	Right-handed alpha
Helix 29	AD2	A	920	928	Right-handed alpha
Helix 30	AD3	A	930	960	Right-handed alpha
Helix 31	AD4	B	264	279	Right-handed alpha
Helix 32	AD5	B	284	288	Right-handed 310
Helix 33	AD6	B	300	310	Right-handed alpha
Helix 34	AD7	B	352	370	Right-handed alpha
Helix 35	AD8	B	413	427	Right-handed alpha
Helix 36	AD9	B	442	445	Right-handed 310
Helix 37	AE1	B	446	456	Right-handed alpha
Helix 38	AE2	B	468	475	Right-handed alpha
Helix 39	AE3	B	478	488	Right-handed alpha
Helix 40	AE4	B	511	525	Right-handed alpha
Helix 41	AE5	B	526	531	Right-handed alpha
Helix 42	AE6	B	535	539	Right-handed 310
Helix 43	AE7	B	540	582	Right-handed alpha
Helix 44	AE8	B	589	609	Right-handed alpha
Helix 45	AE9	B	612	636	Right-handed alpha
Helix 46	AF1	B	636	642	Right-handed alpha
Helix 47	AF2	B	645	664	Right-handed alpha
Helix 48	AF3	B	664	686	Right-handed alpha
Helix 49	AF4	B	689	693	Right-handed 310
Helix 50	AF5	B	695	712	Right-handed alpha
Helix 51	AF6	B	716	731	Right-handed alpha
Helix 52	AF7	B	737	767	Right-handed alpha
Helix 53	AF8	B	770	778	Right-handed alpha
Helix 54	AF9	B	782	802	Right-handed alpha
Helix 55	AG1	B	810	824	Right-handed alpha
Helix 56	AG2	B	829	857	Right-handed alpha
Helix 57	AG3	B	859	865	Right-handed alpha
Helix 58	AG4	B	874	920	Right-handed alpha
Helix 59	AG5	B	920	928	Right-handed alpha
Helix 60	AG6	B	930	960	Right-handed alpha
Helix 61	AG7	C	264	279	Right-handed alpha
Helix 62	AG8	C	284	288	Right-handed 310
Helix 63	AG9	C	300	310	Right-handed alpha
Helix 64	AH1	C	352	370	Right-handed alpha
Helix 65	AH2	C	413	427	Right-handed alpha
Helix 66	AH3	C	442	445	Right-handed 310
Helix 67	AH4	C	446	456	Right-handed alpha
Helix 68	AH5	C	468	475	Right-handed alpha
Helix 69	AH6	C	478	488	Right-handed alpha
Helix 70	AH7	C	511	525	Right-handed alpha
Helix 71	AH8	C	526	531	Right-handed alpha
Helix 72	AH9	C	535	539	Right-handed 310
Helix 73	AI1	C	540	582	Right-handed alpha
Helix 74	AI2	C	589	609	Right-handed alpha
Helix 75	AI3	C	612	636	Right-handed alpha
Helix 76	AI4	C	636	642	Right-handed alpha
Helix 77	AI5	C	645	664	Right-handed alpha
Helix 78	AI6	C	664	686	Right-handed alpha
Helix 79	AI7	C	689	693	Right-handed 310
Helix 80	AI8	C	695	712	Right-handed alpha
Helix 81	AI9	C	716	731	Right-handed alpha
Helix 82	AJ1	C	737	767	Right-handed alpha
Helix 83	AJ2	C	770	778	Right-handed alpha
Helix 84	AJ3	C	782	802	Right-handed alpha
Helix 85	AJ4	C	810	824	Right-handed alpha
Helix 86	AJ5	C	829	857	Right-handed alpha
Helix 87	AJ6	C	859	865	Right-handed alpha
Helix 88	AJ7	C	874	920	Right-handed alpha
Helix 89	AJ8	C	920	928	Right-handed alpha
Helix 90	AJ9	C	930	960	Right-handed alpha
Helix 91	AK1	D	264	279	Right-handed alpha
Helix 92	AK2	D	284	288	Right-handed 310
Helix 93	AK3	D	300	310	Right-handed alpha
Helix 94	AK4	D	352	370	Right-handed alpha
Helix 95	AK5	D	413	427	Right-handed alpha
Helix 96	AK6	D	442	445	Right-handed 310
Helix 97	AK7	D	446	456	Right-handed alpha
Helix 98	AK8	D	468	475	Right-handed alpha
Helix 99	AK9	D	478	488	Right-handed alpha
Helix 100	AL1	D	511	525	Right-handed alpha
Helix 101	AL2	D	526	531	Right-handed alpha
Helix 102	AL3	D	535	539	Right-handed 310
Helix 103	AL4	D	540	582	Right-handed alpha
Helix 104	AL5	D	589	609	Right-handed alpha
Helix 105	AL6	D	612	636	Right-handed alpha
Helix 106	AL7	D	636	642	Right-handed alpha
Helix 107	AL8	D	645	664	Right-handed alpha
Helix 108	AL9	D	664	686	Right-handed alpha
Helix 109	AM1	D	689	693	Right-handed 310
Helix 110	AM2	D	695	712	Right-handed alpha
Helix 111	AM3	D	716	731	Right-handed alpha
Helix 112	AM4	D	737	767	Right-handed alpha
Helix 113	AM5	D	770	778	Right-handed alpha
Helix 114	AM6	D	782	802	Right-handed alpha
Helix 115	AM7	D	810	824	Right-handed alpha
Helix 116	AM8	D	829	857	Right-handed alpha
Helix 117	AM9	D	859	865	Right-handed alpha
Helix 118	AN1	D	874	920	Right-handed alpha
Helix 119	AN2	D	920	928	Right-handed alpha
Helix 120	AN3	D	930	960	Right-handed alpha

There are 8 sheets in PDB entry 8VM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	295	first strand
Strand 2	A	431	438	parallel
Strand 3	A	462	467	parallel
Strand 4	A	498	500	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	338	341	anti-parallel
Strand 3	A	382	386	anti-parallel
Strand 4	A	327	331	parallel
Strand 5	A	394	395	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	431	438	parallel
Strand 3	B	462	467	parallel
Strand 4	B	498	500	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	338	341	anti-parallel
Strand 3	B	382	386	anti-parallel
Strand 4	B	327	331	parallel
Strand 5	B	394	395	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	295	first strand
Strand 2	C	431	438	parallel
Strand 3	C	462	467	parallel
Strand 4	C	498	500	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	338	341	anti-parallel
Strand 3	C	382	386	anti-parallel
Strand 4	C	327	331	parallel
Strand 5	C	394	395	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	295	first strand
Strand 2	D	431	438	parallel
Strand 3	D	462	467	parallel
Strand 4	D	498	500	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	382	386	anti-parallel
Strand 4	D	327	331	parallel
Strand 5	D	394	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VM4