Analysis of interatomic Contacts of Structural Units in PDB entry:
8VMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VMG entry

There are 4 chains in PDB entry 8VMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 26HIS 384
B
 SER 35HIS 384
C
 GLY 382VAL 416
D
 TRP 378GLU 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8VMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 104Right-handed alpha
Helix 2
AA2
A
139 149Right-handed alpha
Helix 3
AA3
A
154 175Right-handed alpha
Helix 4
AA4
A
183 185Right-handed 310
Helix 5
AA5
A
219 223Right-handed 310
Helix 6
AA6
A
224 229Right-handed alpha
Helix 7
AA7
A
236 253Right-handed alpha
Helix 8
AA8
A
261 274Right-handed alpha
Helix 9
AA9
A
277 285Right-handed alpha
Helix 10
AB1
A
286 289Right-handed 310
Helix 11
AB2
A
300 305Right-handed alpha
Helix 12
AB3
A
310 321Right-handed alpha
Helix 13
AB4
A
324 328Right-handed 310
Helix 14
AB5
A
330 336Right-handed alpha
Helix 15
AB6
A
337 339Right-handed 310
Helix 16
AB7
A
340 345Right-handed alpha
Helix 17
AB8
A
370 372Right-handed 310
Helix 18
AB9
A
373 378Right-handed alpha
Helix 19
AC1
A
379 384Right-handed alpha
Helix 20
AC2
B
95 104Right-handed alpha
Helix 21
AC3
B
139 149Right-handed alpha
Helix 22
AC4
B
154 175Right-handed alpha
Helix 23
AC5
B
183 185Right-handed 310
Helix 24
AC6
B
200 204Right-handed 310
Helix 25
AC7
B
219 223Right-handed 310
Helix 26
AC8
B
224 229Right-handed alpha
Helix 27
AC9
B
236 253Right-handed alpha
Helix 28
AD1
B
261 274Right-handed alpha
Helix 29
AD2
B
277 285Right-handed alpha
Helix 30
AD3
B
286 289Right-handed 310
Helix 31
AD4
B
300 305Right-handed alpha
Helix 32
AD5
B
310 319Right-handed alpha
Helix 33
AD6
B
324 328Right-handed 310
Helix 34
AD7
B
330 336Right-handed alpha
Helix 35
AD8
B
337 345Right-handed 310
Helix 36
AD9
B
363 368Right-handed alpha
Helix 37
AE1
B
370 372Right-handed 310
Helix 38
AE2
B
373 378Right-handed alpha
Helix 39
AE3
B
379 384Right-handed 310
Helix 40
AE4
C
384 415Right-handed alpha
Helix 41
AE5
D
384 411Right-handed alpha
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There are 6 sheets in PDB entry 8VMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
36 44anti-parallel
Strand 3
A
112 119anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
68 75anti-parallel
Strand 7
A
52 65anti-parallel
Strand 8
A
36 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
52 65anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
81 88anti-parallel
Strand 5
B
126 133anti-parallel
Strand 6
B
112 119anti-parallel
Strand 7
B
37 44anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
187 189anti-parallel
Strand 3
B
196 198anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
205 206anti-parallel
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